NCIH1436_LUNG


Available Data

  • Vendor Karyotype
  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-5871
DSMZ None
Cellosaurus NCI-H1436
Cosmic 908469.0

Property Value
% Polyploidy None
Ploidy Classification None
Modal Chromosome Number None
Modal Range Numeric None
Marker Chromosomes Average Field None
Primary or Metastasis Metastasis
Count of SV's 0

Details

ecDNA Present (Y/N/P): N

Literature source: https://aacrjournals.org/cancerdiscovery/article/13/4/928/725029/Extrachromosomal-DNA-Amplification-Contributes-to

HSR Classification: N

ATCC Karyotype: 3p is normal

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA']

Predicted Genes on ecDNA

[]

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.6917312335
Image 1

Class Amplicon Complexity Score
ecDNA 1 0.6930337476
Image 2

Class Amplicon Complexity Score
ecDNA 1 1.015662917
Image 3

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: No Chromothripsis Detected

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: None