NCIH1355_LUNG


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Circle Hunter Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-5865
DSMZ None
Cellosaurus NCI-H1355
Cosmic 724866.0

Property Value
% Polyploidy None
Ploidy Classification hyperdiploid
Modal Chromosome Number 54.0
Modal Range Numeric 43-66
Marker Chromosomes Average Field None
Primary or Metastasis Metastasis
Count of SV's

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: modal number = 54; range = 43-66

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification']

Predicted Genes on ecDNA

['GOLPH3', 'PDZD2', 'CNTN1', 'GXYLT1', 'LRRK2', 'MUC19', 'PDZRN4']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.6641567994
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.6398121284
Image 2

Class Amplicon Complexity Score
ecDNA 3 1.125983076
Image 3

Class Amplicon Complexity Score
Linear amplification 4 4e-10
Image 4

Class Amplicon Complexity Score
Linear amplification 5 0.0
Image 5

Prediction

ecDNA: negative


Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 1, 2, 2004