NCIH1339_LUNG


Available Data

  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction

ID Value
ATCC CRL-5979
DSMZ ACC-506
Cellosaurus NCI-H1339
Cosmic None

Details

ecDNA Present (Y/N/P): N

Literature source: https://aacrjournals.org/cancerdiscovery/article/13/4/928/725029/Extrachromosomal-DNA-Amplification-Contributes-to

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification', 'BFB']

Predicted Genes on ecDNA

['GDAP2', 'MAN1A2', 'SPAG17', 'TENT5C', 'WDR3']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.6914936565
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.1955897934
Image 2

Class Amplicon Complexity Score
Linear amplification 3 0.3728633415
Image 3

Class Amplicon Complexity Score
BFB 4 1.501486471
Image 4

Prediction

ecDNA: None


Prediction

No data