Available Data

Vendor Karyotype
Amplicon Architect Prediction

ID	Value
ATCC	CRL-5858
DSMZ	ACC-502
Cellosaurus	NCI-H1184
Cosmic	None

Karyotype Details

Property	Value
% Polyploidy	8.0
Ploidy Classification	hyperdiploid
Modal Chromosome Number	57.0
Modal Range Numeric	53-59
Marker Chromosomes Average Field	6.0
Primary or Metastasis	Metastasis
Count of SV's	9

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: del(p13-p21)

DSMZ Karyotype: human hyperdiploid karyotype with 8% polyploidy - 57(53-59)<2n>XY/XXY, +1, +3, +5, +8, +9, -10, -10, +11, +12, -14, +16, +20, +22, +6mar, add(1)(p34), add(1)(p11), add(3)(p14), add(3)(q21-22), add(5)(p11), add(5)(q11), add(8)(q21), add(11)(q25), add(12)(q24)x1-2, der(12)t(11;12)(q11;q24), add(13)(p11), del(?13)(q12q21), del(16)(p12p13), der(?22)t(14;22)(q21;q13)

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA']

Predicted Genes on ecDNA

['AKIRIN1', 'BMP8A', 'BMP8B', 'C1orf109', 'C1orf122', 'CAP1', 'CDCA8', 'CITED4', 'COL9A2', 'CTPS1', 'DNALI1', 'EPHA10', 'EXO5', 'FHL3', 'GJA9', 'GJA9-MYCBP', 'GNL2', 'HEYL', 'HPCAL4', 'INPP5B', 'KCNQ4', 'KIAA0754', 'MACF1', 'MANEAL', 'MEAF6', 'MFSD2A', 'MTF1', 'MYCBP', 'MYCL', 'NDUFS5', 'NFYC', 'NFYC-AS1', 'NT5C1A', 'OXCT2', 'OXCT2P1', 'PABPC4', 'PABPC4-AS1', 'POU3F1', 'PPIE', 'PPIEL', 'PPT1', 'RHBDL2', 'RIMS3', 'RLF', 'RRAGC', 'RSPO1', 'SF3A3', 'SLFNL1', 'SLFNL1-AS1', 'SMAP2', 'SNIP1', 'SNORA55', 'TMCO2', 'TRIT1', 'UTP11', 'YRDC', 'ZC3H12A', 'ZFP69', 'ZFP69B', 'ZMPSTE24', 'ZNF684']

Predicted Features

View Feature 1 - NCIH1184_LUNG ecDNA

Class	Amplicon	Complexity Score
ecDNA	1	2.018404229

Prediction

ecDNA: None

Prediction

No data