Available Data

Amplicon Architect Prediction

ID	Value
ATCC	None
DSMZ	None
Cellosaurus	None
Cosmic	924250.0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification', 'BFB', 'Complex non-cyclic']

Predicted Genes on ecDNA

['ZFP36L1', 'C19orf12', 'CCNE1', 'CD22', 'CEBPA', 'CEBPA-DT', 'CEBPG', 'CHST8', 'FFAR1', 'FFAR2', 'FFAR3', 'GPR42', 'HAMP', 'KCTD15', 'LSM14A', 'LSR', 'MAG', 'PEPD', 'PLEKHF1', 'URI1', 'USF2', 'BPIFA1', 'BPIFA3', 'BPIFB1', 'IRF2BP2', 'PP2672', 'DKK4', 'POLB', 'SLC20A2', 'VDAC3', 'CACNB1', 'CDK12', 'ERBB2', 'FBXL20', 'GRB7', 'IKZF3', 'MED1', 'MIEN1', 'NEUROD2', 'PGAP3', 'PNMT', 'PPP1R1B', 'RPL19', 'STAC2', 'STARD3', 'TCAP', 'ZPBP2', 'TBC1D31', 'NAIF1', 'SLC25A25', 'AIP', 'C11orf72', 'CABP2', 'CABP4', 'CARNS1', 'CDK2AP2', 'CLCF1', 'CORO1B', 'DOC2GP', 'GPR152', 'GSTP1', 'NDUFV1', 'NUDT8', 'PITPNM1', 'POLD4', 'PPP1CA', 'PTPRCAP', 'RAD9A', 'RPS6KB2', 'TBC1D10C', 'TBX10', 'TMEM134']

Predicted Features

View Feature 1 - MKN7_STOMACH ecDNA

Class	Amplicon	Complexity Score
ecDNA	10	0.5254230861

View Feature 2 - MKN7_STOMACH Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	12	0.7277097379

View Feature 3 - MKN7_STOMACH ecDNA

Class	Amplicon	Complexity Score
ecDNA	13	1.010905684

View Feature 4 - MKN7_STOMACH Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	14	0.247986714

View Feature 5 - MKN7_STOMACH ecDNA

Class	Amplicon	Complexity Score
ecDNA	15	0.5957548878

View Feature 6 - MKN7_STOMACH ecDNA

Class	Amplicon	Complexity Score
ecDNA	1	1.138398069

View Feature 7 - MKN7_STOMACH BFB

Class	Amplicon	Complexity Score
BFB	3	0.9892882358

View Feature 8 - MKN7_STOMACH ecDNA

Class	Amplicon	Complexity Score
ecDNA	4	0.6925823847

View Feature 9 - MKN7_STOMACH ecDNA

Class	Amplicon	Complexity Score
ecDNA	5	1.630940609

View Feature 10 - MKN7_STOMACH ecDNA

Class	Amplicon	Complexity Score
ecDNA	5	0.6731452424

View Feature 11 - MKN7_STOMACH Complex non-cyclic

Class	Amplicon	Complexity Score
Complex non-cyclic	6	0.8343471701

View Feature 12 - MKN7_STOMACH ecDNA

Class	Amplicon	Complexity Score
ecDNA	7	0.6368787474

View Feature 13 - MKN7_STOMACH ecDNA

Class	Amplicon	Complexity Score
ecDNA	8	0.6741463944

View Feature 14 - MKN7_STOMACH Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	9	0.9783349989

Prediction

ecDNA: None

Prediction

No data