MKN1_STOMACH


Available Data

  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC None
DSMZ None
Cellosaurus None
Cosmic 908138.0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'ecDNA', 'Complex non-cyclic', 'BFB']

Predicted Genes on ecDNA

['BCAT1', 'BHLHE41', 'C12orf71', 'C12orf77', 'CAPRIN2', 'CASC1', 'CCDC91', 'DDX11', 'DDX11-AS1', 'ERGIC2', 'ETFRF1', 'FAR2', 'FGFR1OP2', 'INTS13', 'IPO8', 'ITPR2', 'KRAS', 'LMNTD1', 'LRMP', 'MED21', 'OVCH1', 'OVCH1-AS1', 'OVOS2', 'RASSF8', 'RASSF8-AS1', 'SSPN', 'STK38L', 'TM7SF3', 'TMTC1', 'TSPAN11', 'LSM14A', 'SCGB1B2P', 'SCGB2B2', 'WTIP', 'ZNF807P', 'B4GALT5', 'PTGIS', 'SLC9A8']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.6459690279
Image 1

Class Amplicon Complexity Score
ecDNA 2 1.532280958
Image 2

Class Amplicon Complexity Score
Complex non-cyclic 3 0.8111369308
Image 3

Class Amplicon Complexity Score
BFB 4 0.8100437341
Image 4

Class Amplicon Complexity Score
ecDNA 5 0.3991292953
Image 5

Class Amplicon Complexity Score
ecDNA 6 0.4384763555
Image 6

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 9