MHM_HIGH_GRADE_OSTEOSARCOMA


Available Data

  • Amplicon Architect Prediction

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'BFB', 'Linear amplification']

Predicted Genes on ecDNA

['CLPTM1L', 'CTD-3080P12.3', 'SLC6A18', 'SLC6A19', 'TERT', 'ANGPTL5', 'BIRC3', 'CEP126', 'CFAP300', 'YAP1', 'AACS', 'ATP6V0A2', 'BRI3BP', 'CCDC92', 'DHX37', 'DNAH10', 'NCOR2', 'RFLNA', 'SCARB1', 'THRIL', 'TMEM132B', 'UBC', 'ZNF664', 'ZNF664-RFLNA', 'AGAP2', 'AGAP2-AS1', 'ARHGEF25', 'ATP23', 'AVIL', 'B4GALNT1', 'CAND1', 'CDK4', 'CPM', 'CTDSP2', 'CYP27B1', 'DTX3', 'EEF1AKMT3', 'GIHCG', 'HMGA2', 'HMGA2-AS1', 'IFNG', 'IL22', 'IL26', 'KIF5A', 'LRIG3', 'MARCHF9', 'MDM1', 'MDM2', 'METTL1', 'MRS2P2', 'NUP107', 'OS9', 'PIP4K2C', 'RAB21', 'RAP1B', 'RPSAP52', 'SLC26A10', 'SLC35E3', 'SNORA70G', 'TAFA2', 'TBC1D15', 'TPH2', 'TRHDE', 'TRHDE-AS1', 'TSFM', 'TSPAN31']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.7799900966
Image 1

Class Amplicon Complexity Score
BFB 2 1.115804541
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Class Amplicon Complexity Score
Linear amplification 3 0.0
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Class Amplicon Complexity Score
ecDNA 4 0.6753007174
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Class Amplicon Complexity Score
ecDNA 4 1.012331385
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Class Amplicon Complexity Score
ecDNA 4 0.6883561239
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Class Amplicon Complexity Score
ecDNA 4 1.096586587
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Class Amplicon Complexity Score
ecDNA 5 2.138074223
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Class Amplicon Complexity Score
Linear amplification 6 1.325922291
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Class Amplicon Complexity Score
Linear amplification 7 1.1e-09
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Prediction

ecDNA: None


Prediction

No data