MDAMB435S_SKIN


Available Data

  • Vendor Karyotype
  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction

ID Value
ATCC HTB-129
DSMZ None
Cellosaurus MDA-MB-435S
Cosmic None

Property Value
% Polyploidy None
Ploidy Classification hyperdiploid
Modal Chromosome Number 56.0
Modal Range Numeric 55-62
Marker Chromosomes Average Field 19.0
Primary or Metastasis Metastasis
Count of SV's 6

Details

ecDNA Present (Y/N/P): Y

Literature source: https://www.nature.com/articles/nature21356

HSR Classification: N

ATCC Karyotype: modal number = 56; range = 55 to 62The cell line is aneuploid human female (XX), with most chromosome counts in the 55 to 60 range. Normal chromosomes N6, N11, and N22 were absent, while chromosomes N7, N13, N18 and N21 were single. Most of the remainder of normal chromosomes were usually paired, but chromosome N2 was triple. Nineteen marker chromosomes were identified, with most of them formed from structural alterations of the missing copies of the normal chromosomes. Six of these markers involve regions of chromosome N7, while three are recognized as derivatives of chromosome N6. Regions of a third copy of the normal and paired chromosomes N3, N15, N17, N20 are noted in markers M1, M2, M15, and M5, respectively.

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Linear amplification']

Predicted Genes on ecDNA

[]

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.8007085752
Image 1

Class Amplicon Complexity Score
Linear amplification 2 1.292378959
Image 2

Prediction

ecDNA: None


Prediction

No data