MDAMB134VI_BREAST
Available Data
- Vendor Karyotype
- Amplicon Architect Prediction
- Shatterseek Prediction
| ID | Value |
|---|---|
| ATCC | HTB-23 |
| DSMZ | None |
| Cellosaurus | MDA-MB-134-VI |
| Cosmic | None |
| Property | Value |
|---|---|
| % Polyploidy | None |
| Ploidy Classification | mix(hypodiploid, hypertriploid, hypotetraploid) |
| Modal Chromosome Number | 43.0 |
| Modal Range Numeric | 35-91 |
| Marker Chromosomes Average Field | None |
| Primary or Metastasis | Metastasis |
| Count of SV's | 0 |
Details
ecDNA Present (Y/N/P): N
HSR Classification: N
ATCC Karyotype: hypodiploid; modal number = 43 with an extra long chromosome 2-like marker; (P28/29) hypodiploid and hypertriploid to hypotetraploid with large subtelocentric marker
DSMZ Karyotype: No data
Heterogeneity Indications and Other Notes: No data
Download Breakpoint Edges CSV
Prediction
ecDNA Amplicon Predicted: Y
Predicted Amplicon Classes: ['ecDNA']
Predicted Genes on ecDNA
['ADAM2', 'ADGRA2', 'ADRB3', 'ANO1', 'ASH2L', 'BAG4', 'BRF2', 'C8orf86', 'CCND1', 'DDHD2', 'EIF4EBP1', 'EMSY', 'ERLIN2', 'FGF19', 'FGF3', 'FGF4', 'FGFR1', 'GOT1L1', 'GUCY2EP', 'GVQW3', 'IDO1', 'IDO2', 'IGHMBP2', 'KAT6A', 'KCNU1', 'LETM2', 'LRRC32', 'LSM1', 'LTO1', 'MRGPRD', 'MRGPRF', 'MRGPRF-AS1', 'MYEOV', 'NSD3', 'PLPBP', 'PLPP5', 'RAB11FIP1', 'RNF5P1', 'SIRLNT', 'SMIM38', 'STAR', 'TCIM', 'THAP12', 'TPCN2', 'UNC5D', 'WNT11', 'ZMAT4', 'ZNF703']
Predicted Features
View Feature 1 - MDAMB134VI_BREAST ecDNA
| Class | Amplicon | Complexity Score |
|---|---|---|
| ecDNA | 1 | 0.6092973822 |
Prediction
ecDNA: None
Prediction
Shatterseek Prediction: High Confidence
Shatterseek High Confidence Chromosomes: 8
Shatterseek Low Confidence Chromosomes: None