Available Data

Amplicon Architect Prediction
Shatterseek Prediction

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA']

Predicted Genes on ecDNA

['AACS', 'ABCB9', 'ANAPC5', 'ARL6IP4', 'ATP6V0A2', 'B3GNT4', 'BCL7A', 'BRI3BP', 'C12orf43', 'C12orf49', 'C12orf65', 'CAMKK2', 'CCDC62', 'CCDC92', 'CDK2AP1', 'CLIP1', 'CLIP1-AS1', 'DDX55', 'DENR', 'DHX37', 'DIABLO', 'DNAH10', 'EIF2B1', 'FBXO21', 'FBXW8', 'GLT1D1', 'GTF2H3', 'HCAR1', 'HCAR2', 'HCAR3', 'HIP1R', 'HNF1A', 'HNF1A-AS1', 'HPD', 'HRK', 'IL31', 'KDM2B', 'KMT5A', 'KNTC1', 'LRRC43', 'MAP1LC3B2', 'MED13L', 'MLXIP', 'MORN3', 'MPHOSPH9', 'NCOR2', 'OASL', 'OGFOD2', 'ORAI1', 'P2RX4', 'P2RX7', 'PITPNM2', 'PITPNM2-AS1', 'PSMD9', 'RFLNA', 'RHOF', 'RILPL1', 'RILPL2', 'RNF34', 'RNFT2', 'RSRC2', 'SBNO1', 'SBNO1-AS1', 'SCARB1', 'SETD1B', 'SLC15A4', 'SNORA9B', 'SNRNP35', 'TCTN2', 'TESC', 'TESC-AS1', 'THRIL', 'TMED2', 'TMED2-DT', 'TMEM120B', 'TMEM132B', 'TMEM132C', 'TMEM132D', 'TMEM132D-AS1', 'TMEM132D-AS2', 'UBC', 'VPS33A', 'VPS37B', 'WDR66', 'ZCCHC8', 'ZNF664', 'ZNF664-RFLNA', 'ARNTL2', 'ARNTL2-AS1', 'PPFIBP1', 'SMCO2', 'STK38L']

Predicted Features

View Feature 1 - LU99_LUNG ecDNA

Class	Amplicon	Complexity Score
ecDNA	2	0.5546593392

View Feature 2 - LU99_LUNG ecDNA

Class	Amplicon	Complexity Score
ecDNA	2	0.982873791

Prediction

ecDNA: None

Prediction

Shatterseek Prediction: High Confidence

Shatterseek High Confidence Chromosomes: 9, 15

Shatterseek Low Confidence Chromosomes: 1, 11