KYSE450_OESOPHAGUS


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction

ID Value
ATCC None
DSMZ ACC-387
Cellosaurus None
Cosmic 907320.0

Property Value
% Polyploidy 6.7
Ploidy Classification hyperdiploid
Modal Chromosome Number 57.0
Modal Range Numeric 49-57
Marker Chromosomes Average Field 7.0
Primary or Metastasis Primary
Count of SV's 17

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: human hyperdiploid karyotype with 6.7% polyploidy - 57(49-57)<2n>, -Y, +1, +3, +3, +7, +12, +17, -18, +7mar, der(1)t(1;6)(p22;q11), add(1)(p32/34), del(2)(p23), del(3)(p22), del(4)(q21), add(5)(q35), del(6)(q25), add(7)(p22), add(8)(p23), add(9)(q34), del(11)(q14q21), add(12)(q14), del(12)(p11p12), der(14)t(8;14)(q21;p11), del(17)(p11), der(19)t(1;19)(q11;q12) - sideline with add(11)(q?23) - extensive subclonal rearrangements of ch 7

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'Complex non-cyclic', 'ecDNA']

Predicted Genes on ecDNA

['CASC11', 'CASC19', 'CASC21', 'CASC8', 'CCAT1', 'CCAT2', 'MYC', 'POU5F1B', 'PVT1', 'TMEM75']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.4829864804
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.9994182317
Image 2

Class Amplicon Complexity Score
Linear amplification 3 0.6396570267
Image 3

Class Amplicon Complexity Score
Complex non-cyclic 4 2.153576946
Image 4

Class Amplicon Complexity Score
Complex non-cyclic 5 0.5798362546
Image 5

Class Amplicon Complexity Score
ecDNA 6 0.6426675315
Image 6

Class Amplicon Complexity Score
Linear amplification 7 0.568616428
Image 7

Prediction

ecDNA: None


Prediction

No data