Available Data

Vendor Karyotype
Amplicon Architect Prediction

ID	Value
ATCC	None
DSMZ	ACC-381
Cellosaurus	None
Cosmic	753574.0

Karyotype Details

Property	Value
% Polyploidy	4.0
Ploidy Classification	hypotetraploid
Modal Chromosome Number	None
Modal Range Numeric	79-91
Marker Chromosomes Average Field	6.0
Primary or Metastasis	Primary
Count of SV's	18

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: human flat-moded hypotetraploid karyotype with 4% polyploidy - 79-91<4n>Xder(X), -10, -18, -19, -21, -22, -22, +6mar, add(X)(qter), add(1)(p11)/del(1)(p13), add(3)(q21)x1-2, add(5)(p13), der(6)t(4;6)(q12;q14)x1-2, dup(7)(p12p14), der(7)del(7)(p12p21)t(7;9)(q33;q10), add(8)(p12)x1-2, add(9)(q34), add(10)(p14), add(11)(p11), add(12)(q24)x1-2, add(12)(p11-12)x2, del(12)(q14), i(13q)x2, i(14q)x1-2, add(14)(p11), add(19)(p13), add(?20)(q13), add(21)(p11)

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'Complex non-cyclic', 'ecDNA', 'BFB']

Predicted Genes on ecDNA

['ANKRD13D', 'C11orf80', 'C11orf86', 'CLCF1', 'GRK2', 'KDM2A', 'LRFN4', 'PC', 'POLD4', 'RCE1', 'RHOD', 'SPTBN2', 'SSH3', 'SYT12', 'ANO1', 'BIRC2', 'BIRC3', 'CCND1', 'CFAP300', 'CTTN', 'DGAT2', 'DYNC2H1', 'FADD', 'FGF19', 'FGF3', 'FGF4', 'GDPD5', 'LTO1', 'MAP6', 'MMP7', 'MOGAT2', 'MRGPRD', 'MRGPRF', 'MRGPRF-AS1', 'MYEOV', 'PPFIA1', 'SERPINH1', 'SHANK2', 'SHANK2-AS1', 'SMIM38', 'TMEM123', 'TPCN2', 'UVRAG', 'UVRAG-DT', 'WNT11', 'YAP1', 'CDK12', 'ERBB2', 'FOXN1', 'GRB7', 'IFT20', 'IKZF3', 'KRT18P55', 'LYRM9', 'MIEN1', 'NEUROD2', 'NLK', 'NOS2', 'PGAP3', 'PIGS', 'PNMT', 'POLDIP2', 'PPP1R1B', 'PPY2P', 'PRIM2', 'PYY2', 'STARD3', 'TCAP', 'TMEM199', 'TMEM97', 'TNFAIP1', 'UNC119', 'C1GALT1', 'COL28A1', 'GLCCI1', 'GLCCI1-DT', 'ICA1', 'MIOS', 'NXPH1', 'PER4', 'RPA3', 'UMAD1']

Predicted Features

View Feature 1 - KYSE410_OESOPHAGUS Complex non-cyclic

Class	Amplicon	Complexity Score
Complex non-cyclic	10	1.75911647

View Feature 2 - KYSE410_OESOPHAGUS ecDNA

Class	Amplicon	Complexity Score
ecDNA	11	1.385079144

View Feature 3 - KYSE410_OESOPHAGUS ecDNA

Class	Amplicon	Complexity Score
ecDNA	11	0.6908070287

View Feature 4 - KYSE410_OESOPHAGUS Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	12	0.7126201484

View Feature 5 - KYSE410_OESOPHAGUS Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	1	0.348994579

View Feature 6 - KYSE410_OESOPHAGUS Complex non-cyclic

Class	Amplicon	Complexity Score
Complex non-cyclic	2	1.151541806

View Feature 7 - KYSE410_OESOPHAGUS ecDNA

Class	Amplicon	Complexity Score
ecDNA	3	0.4282832601

View Feature 8 - KYSE410_OESOPHAGUS BFB

Class	Amplicon	Complexity Score
BFB	3	1.863831106

View Feature 9 - KYSE410_OESOPHAGUS Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	5	0.693128296

View Feature 10 - KYSE410_OESOPHAGUS ecDNA

Class	Amplicon	Complexity Score
ecDNA	6	0.5273774505

View Feature 11 - KYSE410_OESOPHAGUS ecDNA

Class	Amplicon	Complexity Score
ecDNA	7	0.5658462312

View Feature 12 - KYSE410_OESOPHAGUS Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	8	0.3496854876

View Feature 13 - KYSE410_OESOPHAGUS Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	9	1.5e-09

Prediction

ecDNA: None

Prediction

No data