KYSE30_OESOPHAGUS


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction

ID Value
ATCC None
DSMZ ACC-351
Cellosaurus None
Cosmic None

Property Value
% Polyploidy 8.0
Ploidy Classification hypertriploid
Modal Chromosome Number None
Modal Range Numeric 66-74
Marker Chromosomes Average Field 13.0
Primary or Metastasis Primary
Count of SV's 26

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: highly rearranged hypertriploid karyotype with 8% polyploidy - 66-74<3n>Xder(X), -Y, +1, +1, -5, +7, -9, -10, -15, +16, -18, -18, -19, -21, -21, -21, -22, -22, +12-15mar, t(X;2)(p11;p11), ins(1;1)(p34/36;q21q32), add(1)(q11), der(1)add(1) (p21)(q22), del(2) (q24), der(2)t(2;4)(p11;q11)t(2;4)(q37;q11), del(3)(p14), add(3)(p11), add(4)(q11)x2, der(4)t(1;4)(p11;q11), add(5)(q11), add(5)(q11), add(6)(p21), i(7q), del(7)(p14), add(7)(p14), der(8)t(7;8)(q11;p11), add(9)(p24), i(10q), del(11)(q11)x1-2, add(11)(p13), del(12) (p12.2), i(13q), add(14)(q32), add(15)(p11), add(16)(p1?), add(17)(p1?), add(19)(q13.1)x2, inc. - extreme level of rearrangement

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['BFB', 'Linear amplification', 'Complex non-cyclic', 'ecDNA']

Predicted Genes on ecDNA

['MFSD6', 'NAB1', 'NEMP2', 'MUC20', 'SDHAP1', 'SDHAP2', 'POM121L12']

Predicted Features

Class Amplicon Complexity Score
BFB 10 0.9743042982
Image 1

Class Amplicon Complexity Score
Linear amplification 11 0.9694034705
Image 2

Class Amplicon Complexity Score
BFB 12 1.639804131
Image 3

Class Amplicon Complexity Score
Linear amplification 13 0.3187084943
Image 4

Class Amplicon Complexity Score
Complex non-cyclic 2 1.783706629
Image 5

Class Amplicon Complexity Score
ecDNA 3 0.9873311844
Image 6

Class Amplicon Complexity Score
Complex non-cyclic 4 1.050809372
Image 7

Class Amplicon Complexity Score
ecDNA 5 0.6920228091
Image 8

Class Amplicon Complexity Score
BFB 6 0.7514149998
Image 9

Class Amplicon Complexity Score
ecDNA 7 0.930946058
Image 10

Class Amplicon Complexity Score
ecDNA 8 0.6446607802
Image 11

Prediction

ecDNA: None


Prediction

No data