KPD_HIGH_GRADE_OSTEOSARCOMA


Available Data

  • Amplicon Architect Prediction

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA']

Predicted Genes on ecDNA

['HLA-DOB', 'PSMB8', 'PSMB8-AS1', 'PSMB9', 'TAP1', 'TAP2', 'AARS2', 'ABCC10', 'ADCY10P1', 'AGAP2', 'AGAP2-AS1', 'AMN1', 'ANKRD52', 'APOBEC2', 'ARHGAP9', 'ARHGEF25', 'ATP23', 'ATP6V0CP3', 'AVIL', 'B4GALNT1', 'BICD1', 'BICRAL', 'BYSL', 'C6orf132', 'C6orf223', 'C6orf226', 'CAPN11', 'CAPRIN2', 'CDC5L', 'CDK4', 'CLIC5', 'CNPY2', 'CNPY3', 'CNPY3-GNMT', 'COQ10A', 'CRIP3', 'CTDSP2', 'CUL7', 'CUL9', 'CYP27B1', 'DAAM2', 'DAAM2-AS1', 'DCTN2', 'DDIT3', 'DDX11', 'DDX11-AS1', 'DENND5B', 'DENND5B-AS1', 'DLK2', 'DNAH8', 'DNPH1', 'DTX3', 'EEF1AKMT3', 'ETFBKMT', 'FLJ13224', 'FOXP4', 'FOXP4-AS1', 'GIHCG', 'GLP1R', 'GNMT', 'GTPBP2', 'GUCA1A', 'GUCA1B', 'H3-5', 'HSP90AB1', 'IPO8', 'KCNK16', 'KCNK17', 'KCNK5', 'KIF5A', 'KIF6', 'KLC4', 'KLHDC3', 'LRFN2', 'LRRC73', 'MAD2L1BP', 'MARCHF9', 'MARS1', 'MBD6', 'MEA1', 'MED20', 'METTL1', 'MOCS1', 'MRPL14', 'MRPL2', 'MRPS10', 'MRPS18A', 'MYL6', 'MYL6B', 'MYMX', 'NCR2', 'NFKBIE', 'NFYA', 'OARD1', 'OS9', 'OVOS2', 'PEX6', 'PIP4K2C', 'POLH', 'POLR1C', 'PPP2R5D', 'PRPH2', 'PTCRA', 'PTK7', 'RASSF8', 'RASSF8-AS1', 'RESF1', 'RNF41', 'RPL7L1', 'RRP36', 'RSPH9', 'RUNX2', 'SAYSD1', 'SINHCAF', 'SLC22A7', 'SLC26A10', 'SLC29A1', 'SLC35B2', 'SLC39A5', 'SMARCC2', 'SPATS1', 'SRF', 'SUPT3H', 'TAF8', 'TBCC', 'TCTE1', 'TDRG1', 'TJAP1', 'TMEM151B', 'TMEM63B', 'TREM1', 'TREM2', 'TREML1', 'TREML2', 'TREML3P', 'TREML4', 'TREML5P', 'TRERF1', 'TSFM', 'TSPAN11', 'TSPAN31', 'TSPO2', 'TTBK1', 'UBR2', 'UNC5CL', 'USP49', 'VEGFA', 'XPO5', 'YIPF3', 'ZNF318', 'AADAT', 'CLCN3', 'CPE', 'FAM218A', 'GALNTL6', 'GALNTL6-AS1', 'GK3P', 'GRIA2', 'HPF1', 'KLHL2', 'MFAP3L', 'MSMO1', 'NEK1', 'SPOCK3', 'TLL1', 'TMEM192', 'TRIM60', 'TRIM61']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.6323794649
Image 1

Class Amplicon Complexity Score
ecDNA 1 2.001537847
Image 2

Class Amplicon Complexity Score
ecDNA 1 1.600080596
Image 3

Prediction

ecDNA: None


Prediction

No data