Available Data

Amplicon Architect Prediction
Shatterseek Prediction

ID	Value
ATCC	None
DSMZ	ACC-31
Cellosaurus	None
Cosmic	907273.0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification', 'Complex non-cyclic']

Predicted Genes on ecDNA

['ADAMTSL4', 'ADAMTSL4-AS1', 'ANP32E', 'ANXA9', 'APH1A', 'ARHGEF11', 'ARMC3', 'ARNT', 'BCAN', 'BMI1', 'BNIPL', 'C10orf67', 'C1orf54', 'C1orf56', 'C2CD4D', 'C2CD4D-AS1', 'CA14', 'CD1A', 'CD1C', 'CD1D', 'CD5L', 'CDC42SE1', 'CELF3', 'CERS2', 'CGN', 'CIART', 'COMMD3', 'COMMD3-BMI1', 'CRABP2', 'CTSK', 'CTSS', 'CTXND2', 'CYCSP52', 'ECM1', 'ENSA', 'ETV3', 'ETV3L', 'FALEC', 'FCRL1', 'FCRL2', 'FCRL3', 'FCRL4', 'FCRL5', 'FLG', 'FLG-AS1', 'FLG2', 'GABPB2', 'GBAT2', 'GOLPH3L', 'HDGF', 'HORMAD1', 'HRNR', 'INSRR', 'ISG20L2', 'KIAA1217', 'KIRREL1', 'KIRREL1-IT1', 'LINGO4', 'LRRC71', 'LYSMD1', 'MCL1', 'MINDY1', 'MLLT11', 'MRPL24', 'MRPL9', 'MRPS21', 'MSRB2', 'NBPF18P', 'NEBL', 'NEBL-AS1', 'NES', 'NTRK1', 'OAZ3', 'OTUD1', 'PEAR1', 'PI4KB', 'PIP4K2A', 'PIP5K1A', 'PLEKHO1', 'POGZ', 'PRCC', 'PRPF3', 'PRUNE1', 'PSMB4', 'PSMD4', 'PTF1A', 'RFX5', 'RIIAD1', 'RORC', 'RPRD2', 'RPTN', 'RRNAD1', 'S100A10', 'S100A11', 'SCNM1', 'SELENBP1', 'SEMA6C', 'SETDB1', 'SH2D2A', 'SNORD13C', 'SNX27', 'SPAG6', 'TARS2', 'TCHH', 'TCHHL1', 'TDRKH', 'TDRKH-AS1', 'THEM4', 'THEM5', 'TMOD4', 'TNFAIP8L2', 'TNFAIP8L2-SCNM1', 'TUFT1', 'VPS45', 'VPS72', 'ZNF687', 'ZNF687-AS1']

Predicted Features

View Feature 1 - KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE ecDNA

Class	Amplicon	Complexity Score
ecDNA	1	1.598905129

View Feature 2 - KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	2	0.723910691

View Feature 3 - KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE Complex non-cyclic

Class	Amplicon	Complexity Score
Complex non-cyclic	3	0.7439080233

View Feature 4 - KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	4	0.6829933726

Prediction

ecDNA: None

Prediction

Shatterseek Prediction: No Chromothripsis Detected

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: None