Available Data

Amplicon Architect Prediction

ID	Value
ATCC	None
DSMZ	None
Cellosaurus	None
Cosmic	1240160.0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'ecDNA', 'Complex non-cyclic', 'BFB']

Predicted Genes on ecDNA

['ANO1', 'CCND1', 'CPT1A', 'CTTN', 'FADD', 'FGF19', 'FGF3', 'FGF4', 'GAL', 'IGHMBP2', 'LRP5', 'LTO1', 'MRGPRD', 'MRGPRF', 'MRGPRF-AS1', 'MRPL21', 'MYEOV', 'PPFIA1', 'PPP6R3', 'SHANK2', 'SMIM38', 'TESMIN', 'TPCN2']

Predicted Features

View Feature 1 - JHH7_LIVER Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	1	0.5752907478

View Feature 2 - JHH7_LIVER ecDNA

Class	Amplicon	Complexity Score
ecDNA	2	1.347549703

View Feature 3 - JHH7_LIVER Complex non-cyclic

Class	Amplicon	Complexity Score
Complex non-cyclic	3	1.227723445

View Feature 4 - JHH7_LIVER BFB

Class	Amplicon	Complexity Score
BFB	4	1.002384899

View Feature 5 - JHH7_LIVER ecDNA

Class	Amplicon	Complexity Score
ecDNA	5	0.6118096995

View Feature 6 - JHH7_LIVER Complex non-cyclic

Class	Amplicon	Complexity Score
Complex non-cyclic	6	1.100184138

Prediction

ecDNA: None

Prediction

No data