Available Data

Amplicon Architect Prediction

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Complex non-cyclic', 'ecDNA', 'BFB']

Predicted Genes on ecDNA

['ANGPTL5', 'ARHGAP42', 'BIRC2', 'BIRC3', 'CEP126', 'CFAP300', 'DCUN1D5', 'DYNC2H1', 'FAT3', 'MMP1', 'MMP10', 'MMP12', 'MMP13', 'MMP20', 'MMP27', 'MMP3', 'MMP7', 'MMP8', 'MTNR1B', 'PGR', 'PGR-AS1', 'SLC36A4', 'SNORD13I', 'TMEM123', 'TRPC6', 'WTAPP1', 'YAP1', 'CEBPA', 'CEBPA-DT', 'CEBPG', 'CEP89', 'CHST8', 'FAAP24', 'FAM187B', 'FXYD1', 'FXYD3', 'FXYD5', 'FXYD7', 'GPATCH1', 'GPI', 'GRAMD1A', 'HPN', 'HPN-AS1', 'KCTD15', 'KIAA0355', 'LGI4', 'LRP3', 'LSR', 'PDCD2L', 'PEPD', 'RHPN2', 'SCGB1B2P', 'SCGB2B2', 'SCGB2B3P', 'SCN1B', 'SLC7A10', 'UBA2', 'WDR88', 'WTIP', 'ZNF181', 'ZNF30', 'ZNF30-AS1', 'ZNF302', 'ZNF599', 'ZNF792', 'ZNF807P']

Predicted Features

View Feature 1 - JHESOAD1_OESOPHAGUS Complex non-cyclic

Class	Amplicon	Complexity Score
Complex non-cyclic	1	1.50255367

View Feature 2 - JHESOAD1_OESOPHAGUS ecDNA

Class	Amplicon	Complexity Score
ecDNA	2	1.325595436

View Feature 3 - JHESOAD1_OESOPHAGUS BFB

Class	Amplicon	Complexity Score
BFB	3	0.9381406607

View Feature 4 - JHESOAD1_OESOPHAGUS ecDNA

Class	Amplicon	Complexity Score
ecDNA	4	0.8000185382

Prediction

ecDNA: None

Prediction

No data