Available Data

Amplicon Architect Prediction

ID	Value
ATCC	None
DSMZ	None
Cellosaurus	None
Cosmic	907055.0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification']

Predicted Genes on ecDNA

['PDE4D', 'ANXA13', 'ATAD2', 'C8orf76', 'CASC11', 'CASC19', 'CASC21', 'CASC8', 'CCAT1', 'CCAT2', 'CSMD3', 'DERL1', 'FAM83A', 'FAM83A-AS1', 'FAM91A1', 'FBXO32', 'FER1L6', 'FER1L6-AS1', 'FER1L6-AS2', 'KLHL38', 'LRATD2', 'MTSS1', 'MYC', 'NDUFB9', 'NSMCE2', 'PCAT1', 'PCAT2', 'POU5F1B', 'PRNCR1', 'PVT1', 'RNF139', 'RNF139-AS1', 'SLC30A8', 'SMILR', 'SQLE', 'TATDN1', 'TBC1D31', 'TMEM65', 'TMEM75', 'TRIB1', 'TRMT12', 'TRPS1', 'WASHC5', 'WDYHV1', 'ZHX1', 'ZHX1-C8orf76', 'ZHX2', 'ZNF572']

Predicted Features

View Feature 1 - HGC27_STOMACH ecDNA

Class	Amplicon	Complexity Score
ecDNA	1	0.642784033

View Feature 2 - HGC27_STOMACH Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	2	0.7096780454

View Feature 3 - HGC27_STOMACH ecDNA

Class	Amplicon	Complexity Score
ecDNA	3	1.630066489

Prediction

ecDNA: None

Prediction

No data