Available Data

Vendor Karyotype
Amplicon Architect Prediction

ID	Value
ATCC	None
DSMZ	ACC-494
Cellosaurus	None
Cosmic	1290922.0

Karyotype Details

Property	Value
% Polyploidy	13.0
Ploidy Classification	mix(hypertetraploid, hypopentaploid)
Modal Chromosome Number	None
Modal Range Numeric	92-107
Marker Chromosomes Average Field	28.0
Primary or Metastasis	Primary
Count of SV's	20

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: human highly-rearranged flat-moded hypertetraploid/hypopentaploid karyotype with 13% polyploidy - 92-107<4n>XX, -X, -X, +1, -3, -3, -3, +5, +5, +5, +6, +7, +7, -8, +10, -13, -13, -14, -15, -15, -16, -16, -17, -17, -18, -18, -18, -19, -19, -20, -20, -21, -21, -22, -22, -22, +28-29mar, add(X)(p2?)x2, add(1)(p36)x2, add(1)(p35), add(1)(q1?2)x2, der(2)t(2;3)(p16;q11), add(5)(p11q3?4)x2, add(5)(q11), der(5)t(5;?;3)(q1;?;p11), der(5)t(5;5)(p1?;q1?4), i(5p), add(6)(p11), add(7)(p14), add(7)(p11)x2, add(7)(q11)x2, add(8)(q21), del(9)(p23), del(9)(p11), i(10p), del(11)(q22), der(12)t(7;12)(q11;q24), add(14)(p11)x2, add(15)(p11), add(16)(p13), add(16)(q23), add(17)(p11), del(17)(p12), add(18)(p11), add(19)(p13), add(19)(q13), del(22)(q12.2) - HDQ-P1 markers

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'ecDNA', 'BFB']

Predicted Genes on ecDNA

['ACTN3', 'ANKRD13D', 'BBS1', 'C11orf80', 'C11orf86', 'CCDC87', 'CCS', 'CNIH2', 'CTSF', 'DPP3', 'GRK2', 'KDM2A', 'LRFN4', 'PC', 'PELI3', 'POLD4', 'RBM14', 'RBM14-RBM4', 'RBM4', 'RBM4B', 'RCE1', 'RHOD', 'SPTBN2', 'SSH3', 'SYT12', 'TMEM151A', 'YIF1A', 'ZDHHC24', 'ANO1', 'CCND1', 'CPT1A', 'FADD', 'FGF19', 'FGF3', 'FGF4', 'GAL', 'IGHMBP2', 'LTO1', 'MRGPRD', 'MRGPRF', 'MRGPRF-AS1', 'MRPL21', 'MYEOV', 'SMIM38', 'TESMIN', 'TPCN2', 'DOCK9-DT']

Predicted Features

View Feature 1 - HDQP1_BREAST Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	1	1.067655252

View Feature 2 - HDQP1_BREAST ecDNA

Class	Amplicon	Complexity Score
ecDNA	2	1.037769561

View Feature 3 - HDQP1_BREAST ecDNA

Class	Amplicon	Complexity Score
ecDNA	3	0.6333966394

View Feature 4 - HDQP1_BREAST ecDNA

Class	Amplicon	Complexity Score
ecDNA	4	0.5487507398

View Feature 5 - HDQP1_BREAST Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	5	0.1729367856

View Feature 6 - HDQP1_BREAST Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	6	0.565984151

View Feature 7 - HDQP1_BREAST BFB

Class	Amplicon	Complexity Score
BFB	8	0.8259445664

Prediction

ecDNA: None

Prediction

No data