HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction

ID Value
ATCC None
DSMZ ACC-17
Cellosaurus None
Cosmic 924110.0

Property Value
% Polyploidy None
Ploidy Classification hypodiploid
Modal Chromosome Number 36.0
Modal Range Numeric 35-38
Marker Chromosomes Average Field None
Primary or Metastasis None
Count of SV's 0

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: remarkable human hypodiploid cell line with large number of rearrangements involving all chromosomes except ch 10 - 36(35-38)<2n>X, der(Y), breakpoints at: 1p21, 1q11, 2p14, 2q37, 3q21, 3p14, 3q11, 3q25.2, 3q27, 4q25, 5q11, 5q35, 6q15/16, 7p14, 8q21.1, 8q23, 8q24.2, 9p11, 11q13, 12p12, 12q24.3, 13p11, 13q14, 14q21, 14q23/24.2, 15p11, 15q13, 17p11, 17q25, 18p11, 19p13, 19q13, 21q21, 22q33, Ycen, Yq12

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Complex non-cyclic', 'ecDNA', 'Linear amplification']

Predicted Genes on ecDNA

['AK3', 'CD274', 'CDC37L1', 'CDC37L1-DT', 'ERMP1', 'GLIS3', 'GLIS3-AS1', 'INSL4', 'INSL6', 'JAK2', 'KCNV2', 'KIAA2026', 'MLANA', 'PDCD1LG2', 'PLGRKT', 'PLPP6', 'PUM3', 'RCL1', 'RFX3', 'RFX3-AS1', 'RIC1', 'RLN1', 'RLN2', 'SLC1A1', 'SPATA6L', 'VLDLR', 'VLDLR-AS1']

Predicted Features

Class Amplicon Complexity Score
Complex non-cyclic 1 1.311512754
Image 1

Class Amplicon Complexity Score
Complex non-cyclic 2 1.363902878
Image 2

Class Amplicon Complexity Score
ecDNA 3 0.6814506191
Image 3

Class Amplicon Complexity Score
Linear amplification 4 1.262435224
Image 4

Class Amplicon Complexity Score
Complex non-cyclic 5 1.565963456
Image 5

Class Amplicon Complexity Score
Linear amplification 6 3.3e-09
Image 6

Prediction

ecDNA: None


Prediction

No data