HCC95_LUNG


Available Data

  • Amplicon Architect Prediction
  • Shatterseek Prediction

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Complex non-cyclic', 'Linear amplification', 'ecDNA', 'BFB']

Predicted Genes on ecDNA

['ABTB2', 'APIP', 'CAT', 'CD44', 'EHF', 'ELF5', 'FJX1', 'LDLRAD3', 'PAMR1', 'PDHX', 'SLC1A2', 'SNORD164', 'TRIM44', 'LRFN5']

Predicted Features

Class Amplicon Complexity Score
Complex non-cyclic 1 1.866758982
Image 1

Class Amplicon Complexity Score
Linear amplification 3 0.8540400426
Image 2

Class Amplicon Complexity Score
Complex non-cyclic 4 0.6902789287
Image 3

Class Amplicon Complexity Score
ecDNA 5 0.5553736268
Image 4

Class Amplicon Complexity Score
ecDNA 6 0.6449899436
Image 5

Class Amplicon Complexity Score
BFB 7 0.5285794579
Image 6

Class Amplicon Complexity Score
Linear amplification 8 0.4452783686
Image 7

Class Amplicon Complexity Score
Complex non-cyclic 9 1.216960732
Image 8

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: High Confidence

Shatterseek High Confidence Chromosomes: 3, 9, 12

Shatterseek Low Confidence Chromosomes: 1