HCC2157_BREAST


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Circle Hunter Prediction

ID Value
ATCC CRL-2340
DSMZ None
Cellosaurus HCC2157
Cosmic 749715.0

Property Value
% Polyploidy 22.0
Ploidy Classification hypertriploid
Modal Chromosome Number 75.0
Modal Range Numeric 71-80
Marker Chromosomes Average Field None
Primary or Metastasis Primary
Count of SV's 0

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: Number of cells examined = 59; Modal Chromosome Number = 75 with a range of 65 to 79; Polyploidy Rate = 22%

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'ecDNA', 'Complex non-cyclic']

Predicted Genes on ecDNA

['SCARNA16', 'SEC14L1', 'SEPTIN9', 'SEPTIN9-DT', 'SNHG20', 'CITED4', 'CTPS1', 'KCNQ4', 'SCMH1', 'SLFNL1', 'SLFNL1-AS1', 'ADAMTS14', 'ADK', 'AGAP5', 'AIFM2', 'ANAPC16', 'ANXA7', 'AP3M1', 'ASCC1', 'BMS1P4', 'BMS1P4-AGAP5', 'C10orf105', 'C10orf55', 'CAMK2G', 'CDH23', 'CDH23-AS1', 'CFAP70', 'CHCHD1', 'CHST3', 'COL13A1', 'DDIT4', 'DNAJB12', 'DNAJC9', 'DNAJC9-AS1', 'ECD', 'EIF4EBP2', 'FAM149B1', 'FAM241B', 'FUT11', 'GLUD1P3', 'HK1', 'HKDC1', 'LRRC20', 'MACROH2A2', 'MCU', 'MICU1', 'MRPS16', 'MSS51', 'MYOZ1', 'NDST2', 'NEUROG3', 'NODAL', 'NPFFR1', 'NUDT13', 'OIT3', 'P4HA1', 'PALD1', 'PCBD1', 'PLA2G12B', 'PLAU', 'PPA1', 'PPP3CB', 'PPP3CB-AS1', 'PRF1', 'PSAP', 'SAR1A', 'SEC24C', 'SGPL1', 'SLC29A3', 'SNORA11F', 'SPOCK2', 'SUPV3L1', 'SYNPO2L', 'TACR2', 'TBATA', 'TSPAN15', 'TYSND1', 'UNC5B', 'UNC5B-AS1', 'USP54', 'VCL', 'VSIR', 'ZSWIM8', 'ZSWIM8-AS1']

Predicted Features

Class Amplicon Complexity Score
ecDNA 10 0.6916397226
Image 1

Class Amplicon Complexity Score
Linear amplification 1 0.6122664598
Image 2

Class Amplicon Complexity Score
ecDNA 2 1.156753473
Image 3

Class Amplicon Complexity Score
Complex non-cyclic 3 0.7624239058
Image 4

Class Amplicon Complexity Score
ecDNA 4 0.6927472642
Image 5

Class Amplicon Complexity Score
Complex non-cyclic 5 1.311132204
Image 6

Class Amplicon Complexity Score
ecDNA 6 0.5976144897
Image 7

Class Amplicon Complexity Score
Linear amplification 7 0.0
Image 8

Class Amplicon Complexity Score
Complex non-cyclic 8 0.8758515072
Image 9

Class Amplicon Complexity Score
Linear amplification 9 0.0
Image 10

Prediction

ecDNA: negative


Prediction

No data