HCC202_BREAST


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction

ID Value
ATCC CRL-2316
DSMZ None
Cellosaurus HCC202
Cosmic 1290906.0

Property Value
% Polyploidy None
Ploidy Classification polyploid
Modal Chromosome Number None
Modal Range Numeric None
Marker Chromosomes Average Field None
Primary or Metastasis Primary
Count of SV's 0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: polyploid

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification', 'Complex non-cyclic']

Predicted Genes on ecDNA

['ASPHD2', 'CRYBA4', 'CRYBB1', 'HPS4', 'MIAT', 'MIATNB', 'MYO18B', 'SEZ6L', 'SRRD', 'TFIP11', 'TPST2', 'ATP5MC1', 'CALCOCO2', 'CDK12', 'ERBB2', 'FBXL20', 'GRB7', 'GSDMB', 'HOXB-AS1', 'HOXB-AS3', 'HOXB1', 'HOXB13', 'HOXB2', 'HOXB3', 'HOXB4', 'HOXB5', 'HOXB6', 'HOXB7', 'HOXB8', 'HOXB9', 'IKZF3', 'MED1', 'MIEN1', 'NEUROD2', 'PGAP3', 'PNMT', 'PPP1R1B', 'PRAC1', 'PRAC2', 'SKAP1', 'SNF8', 'STARD3', 'TCAP', 'TTLL6', 'UBE2Z', 'ZPBP2', 'ABHD15', 'ANKRD13B', 'BLMH', 'CORO6', 'CPD', 'EFCAB5', 'GIT1', 'GOSR1', 'MBTD1', 'NME1', 'NME1-NME2', 'NME2', 'NSRP1', 'SLC6A4', 'SSH2', 'TMIGD1', 'TP53I13']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 1.034786949
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.0
Image 2

Class Amplicon Complexity Score
ecDNA 3 0.6290288241
Image 3

Class Amplicon Complexity Score
ecDNA 3 0.6818788282
Image 4

Class Amplicon Complexity Score
Linear amplification 4 0.0442690979
Image 5

Class Amplicon Complexity Score
Complex non-cyclic 5 1.628642138
Image 6

Class Amplicon Complexity Score
Linear amplification 6 1.21433717
Image 7

Class Amplicon Complexity Score
Linear amplification 7 0.6959393773
Image 8

Class Amplicon Complexity Score
Linear amplification 8 0.6887274474
Image 9

Prediction

ecDNA: None


Prediction

No data