HCC1954_BREAST


Available Data

  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-2338
DSMZ None
Cellosaurus HCC1954
Cosmic 749709.0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification', 'BFB']

Predicted Genes on ecDNA

['ENDOD1', 'SESN3', 'AARD', 'ABRA', 'ANGPT1', 'AP3S1', 'ARL14EPL', 'ATG12', 'BRD9', 'BTNL3', 'BTNL8', 'BTNL9', 'C5orf38', 'CCDC26', 'CCND1', 'CDO1', 'CEP72', 'CLPTM1L', 'CNOT6', 'COMMD10', 'CSMD3', 'CTD-2194D22.4', 'CTD-3080P12.3', 'EIF3E', 'EIF3H', 'EMC2', 'EXT1', 'FAM49B', 'FEM1C', 'FGF19', 'FGF4', 'FLT4', 'GFPT2', 'GSDMC', 'HEIH', 'IRX2', 'IRX4', 'LPCAT1', 'LSINCT5', 'LTO1', 'LVRN', 'MAPK9', 'MED30', 'MGAT1', 'MRPL36', 'MYEOV', 'NDUFS6', 'NKD2', 'OR2V1', 'OR2V2', 'OR2Y1', 'OXR1', 'PCAT1', 'PCAT2', 'PRNCR1', 'RACK1', 'RAD21', 'RAD21-AS1', 'RASGEF1C', 'RNF130', 'RSPO2', 'SAMD12', 'SAMD12-AS1', 'SCGB3A1', 'SDHAP3', 'SEMA6A', 'SEMA6A-AS1', 'SEMA6A-AS2', 'SLC12A7', 'SLC30A8', 'SLC6A18', 'SLC6A19', 'SLC6A3', 'SLC9A3', 'SMIM38', 'SNORD168', 'SNORD95', 'SNORD96A', 'TERT', 'TICAM2', 'TMED7', 'TMED7-TICAM2', 'TMEM75', 'TPPP', 'TRIM41', 'TRIM7', 'TRIP13', 'UTP23', 'ZDHHC11', 'ZDHHC11B', 'ZFP62', 'ANKRD60', 'APCDD1L', 'APCDD1L-DT', 'ATP5F1E', 'CDH26', 'CTSZ', 'EDN3', 'FAM217B', 'GNAS', 'GNAS-AS1', 'NELFCD', 'NPEPL1', 'PHACTR3', 'PHACTR3-AS1', 'PPP1R3D', 'PPP4R1L', 'PRELID3B', 'RAB22A', 'SLMO2-ATP5E', 'STX16', 'STX16-NPEPL1', 'SYCP2', 'TUBB1', 'VAPB', 'ZNF831', 'ADAM5']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.6914748351
Image 1

Class Amplicon Complexity Score
ecDNA 1 0.8444080694
Image 2

Class Amplicon Complexity Score
ecDNA 1 0.6160751746
Image 3

Class Amplicon Complexity Score
ecDNA 1 1.417414151
Image 4

Class Amplicon Complexity Score
Linear amplification 2 0.6306462002
Image 5

Class Amplicon Complexity Score
ecDNA 3 0.6463352895
Image 6

Class Amplicon Complexity Score
Linear amplification 4 0.4587312623
Image 7

Class Amplicon Complexity Score
BFB 5 0.9161371846
Image 8

Class Amplicon Complexity Score
Linear amplification 6 5e-10
Image 9

Class Amplicon Complexity Score
BFB 7 1.109067078
Image 10

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 2, 5, 8, 10, 21, 22