HCC1599_BREAST


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction

ID Value
ATCC CRL-2331
DSMZ ACC-503
Cellosaurus HCC1599
Cosmic 749713.0

Property Value
% Polyploidy None
Ploidy Classification mix (multiploid, hypertetraploid)
Modal Chromosome Number None
Modal Range Numeric 92-105
Marker Chromosomes Average Field 28.0
Primary or Metastasis Primary
Count of SV's 23

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: multiploid. The cell population has several ploidy indices.

DSMZ Karyotype: human highly rearranged flat-moded hypertetraploid karyotype - 92-105<4n>XX, -X, -X, -2, -5, -5, -5, +7, -9, +10, -11, -13, -13, -14, -15, -16, -17, -17, +18, +19, -20, -20, -20, -21, -22, -22, -22, +27-30mar, del(X)(q23), add(1)(p36)x2, der(1;3)(q10;q10)del(1)(p35), del(1)(p35), add(2)(q3?), add(3)(q2?)x2, add(4)(q2?)x2, der(4;14)(q10;q10), add(5)(p15), add(6)(p23), add(6)(q25)x2, add(7)(p11), add(7)(p22)x2, add(7)(q31), add(7)(p11), add(8)(p11), add(8)(q24), add(9)(p22), add(9)(p11), add(10)(q24)x2, add(11)(p12), add(11)(q2?), del(11)(q13), i(13q), add(14)(p11), del(16)(p13.2), add(16)(q22), add(16)(q24), add(19)(q13)x2, add(19)(q13.2), add(21)(p11)

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification', 'Complex non-cyclic']

Predicted Genes on ecDNA

['ANKRD27', 'C19orf12', 'CCNE1', 'CEP89', 'DPY19L3', 'FAAP24', 'NUDT19', 'PDCD5', 'PLEKHF1', 'RGS9BP', 'RHPN2', 'SLC7A9', 'SNORA68B', 'TDRD12', 'THEG5', 'TSHZ3', 'URI1', 'ZNF507', 'ZNF536', 'LEKR1', 'PA2G4P4', 'TIPARP', 'TIPARP-AS1']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.5596280312
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.6276359086
Image 2

Class Amplicon Complexity Score
Linear amplification 3 0.6646954009
Image 3

Class Amplicon Complexity Score
ecDNA 4 0.6850997123
Image 4

Class Amplicon Complexity Score
Complex non-cyclic 5 1.309417534
Image 5

Prediction

ecDNA: None


Prediction

No data