HCC1569_BREAST


Available Data

  • Vendor Karyotype
  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction

ID Value
ATCC CRL-2330
DSMZ None
Cellosaurus HCC1569
Cosmic 907046.0

Property Value
% Polyploidy None
Ploidy Classification polyploid
Modal Chromosome Number None
Modal Range Numeric None
Marker Chromosomes Average Field None
Primary or Metastasis Primary
Count of SV's 0

Details

ecDNA Present (Y/N/P): Y

Literature source: https://www.nature.com/articles/nature21356

HSR Classification: N

ATCC Karyotype: polyploid

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification', 'Complex non-cyclic']

Predicted Genes on ecDNA

['C19orf12', 'CCNE1', 'PLEKHF1', 'POP4', 'UQCRFS1', 'URI1', 'VSTM2B', 'ZNF536', 'KCNS1', 'PI3', 'SEMG1', 'SEMG2', 'WFDC12', 'WFDC5', 'ABHD1', 'AGBL5', 'AGBL5-AS1', 'ATRAID', 'CAD', 'CGREF1', 'DNAJC5G', 'EIF2B4', 'EMILIN1', 'FTH1P3', 'GTF3C2', 'GTF3C2-AS1', 'KHK', 'MAPRE3', 'MAPRE3-AS1', 'MPV17', 'OST4', 'PPM1G', 'PREB', 'PRR30', 'SLC30A3', 'SLC5A6', 'SNX17', 'TCF23', 'TMEM214', 'TRIM54', 'UCN', 'ZNF513', 'ERBB2', 'GRB7', 'IKZF3', 'MIEN1', 'PGAP3']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 10 0.8096449106
Image 1

Class Amplicon Complexity Score
ecDNA 11 0.5988907733
Image 2

Class Amplicon Complexity Score
ecDNA 12 0.4576584747
Image 3

Class Amplicon Complexity Score
Linear amplification 13 0.8199494716
Image 4

Class Amplicon Complexity Score
ecDNA 1 0.4945961562
Image 5

Class Amplicon Complexity Score
Linear amplification 2 0.9002125626
Image 6

Class Amplicon Complexity Score
Linear amplification 3 0.0
Image 7

Class Amplicon Complexity Score
Linear amplification 4 0.6573940873
Image 8

Class Amplicon Complexity Score
Complex non-cyclic 5 1.40287121
Image 9

Class Amplicon Complexity Score
Linear amplification 6 0.0025681729
Image 10

Class Amplicon Complexity Score
ecDNA 7 0.4649819357
Image 11

Class Amplicon Complexity Score
Linear amplification 8 1.137788747
Image 12

Class Amplicon Complexity Score
Linear amplification 9 1.058582559
Image 13

Prediction

ecDNA: None


Prediction

No data