HCC1187_BREAST


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-2322
DSMZ None
Cellosaurus HCC1187
Cosmic 749711.0

Property Value
% Polyploidy None
Ploidy Classification mulitploid
Modal Chromosome Number None
Modal Range Numeric None
Marker Chromosomes Average Field None
Primary or Metastasis Primary
Count of SV's 0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: multiploid; cell population has several ploidy indices

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification']

Predicted Genes on ecDNA

['BYSL', 'C6orf132', 'CCND3', 'FOXP4', 'FOXP4-AS1', 'FRS3', 'GUCA1A', 'GUCA1B', 'MDFI', 'MED20', 'MRPS10', 'NCR2', 'PGC', 'PRICKLE4', 'PUM1', 'SNORD103C', 'TAF8', 'TFEB', 'TOMM6', 'TRERF1', 'USP49', 'SNORD137', 'BIVM', 'CCDC168', 'METTL21C', 'POGLUT2', 'TEX30', 'TPP2', 'ASXL1', 'NOL4L', 'NOL4L-DT']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.794474119
Image 1

Class Amplicon Complexity Score
Linear amplification 2 9e-10
Image 2

Class Amplicon Complexity Score
ecDNA 3 0.6917979921
Image 3

Class Amplicon Complexity Score
Linear amplification 4 0.8714209536
Image 4

Class Amplicon Complexity Score
ecDNA 5 0.6556459487
Image 5

Class Amplicon Complexity Score
ecDNA 6 0.5496353352
Image 6

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: High Confidence

Shatterseek High Confidence Chromosomes: 3, 5, 19

Shatterseek Low Confidence Chromosomes: 10, 20, 23