FUOV1_OVARY


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction

ID Value
ATCC None
DSMZ ACC-444
Cellosaurus None
Cosmic 1240129.0

Property Value
% Polyploidy 12.0
Ploidy Classification hypotriploid
Modal Chromosome Number None
Modal Range Numeric 58-62
Marker Chromosomes Average Field None
Primary or Metastasis Primary
Count of SV's 11

Details

ecDNA Present (Y/N/P): Y

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: human flat-moded hypotriploid karyotype with 12% polyploidy - 58-62<3n>X, -X, -X, -1, -2, -3, -4, -7, +9, -10, -12, -13, -14, -16, -17, -17, -18, -19, -20, -20, -22, +fra, +dm, del(2)(p23), inv(3)(p25q29), del(4)(q21/22), add(5)(p11), add(6)(q27), add(9)(p11), add(11)(p15)x2, add(11)(q24), add(14)(p11), add(14)(p11), add(16)(p13), add(19)(q13)x2, add(?21)(p11)x2 - resembles published karyotype

Heterogeneity Indications and Other Notes: dm

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'ecDNA']

Predicted Genes on ecDNA

['RBM39', 'AHCY', 'ASIP', 'CHMP4B', 'DYNLRB1', 'EIF2S2', 'ITCH', 'MAP1LC3A', 'NCOA6', 'PIGU', 'RALY', 'RALY-AS1', 'TP53INP2', 'FBXO45', 'MUC20', 'MUC4', 'PCYT1A', 'RNF168', 'SDHAP1', 'SDHAP2', 'SLC51A', 'SMCO1', 'TCTEX1D2', 'TFRC', 'TM4SF19', 'TM4SF19-AS1', 'TM4SF19-TCTEX1D2', 'TNK2', 'TNK2-AS1', 'UBXN7', 'UBXN7-AS1', 'WDR53', 'ZDHHC19', 'C19orf12', 'CCNE1', 'PLEKHF1', 'POP4', 'URI1', 'VSTM2B', 'CASC11', 'MYC', 'PVT1', 'TMEM75', 'ASB2', 'CCDC197', 'DDX24', 'FAM181A', 'FAM181A-AS1', 'IFI27', 'IFI27L1', 'IFI27L2', 'OTUB2', 'PPP4R4', 'SERPINA1', 'SERPINA10', 'SERPINA11', 'SERPINA12', 'SERPINA13P', 'SERPINA2', 'SERPINA3', 'SERPINA4', 'SERPINA5', 'SERPINA6', 'SERPINA9', 'ACBD4', 'ADAM11', 'C1QL1', 'CCDC103', 'CCDC43', 'DBF4B', 'DCAKD', 'EFTUD2', 'FAM187A', 'FZD2', 'GFAP', 'GJC1', 'HIGD1B', 'KIF18B', 'MEIOC', 'NMT1', 'PLCD3']

Predicted Features

Class Amplicon Complexity Score
ecDNA 10 0.3949612666
Image 1

Class Amplicon Complexity Score
ecDNA 10 0.4262489653
Image 2

Class Amplicon Complexity Score
Linear amplification 1 0.6673105714
Image 3

Class Amplicon Complexity Score
ecDNA 2 0.7949341089
Image 4

Class Amplicon Complexity Score
ecDNA 3 0.6679361744
Image 5

Class Amplicon Complexity Score
Linear amplification 4 0.7047793451
Image 6

Class Amplicon Complexity Score
ecDNA 5 0.6648034619
Image 7

Class Amplicon Complexity Score
Linear amplification 6 0.9493685249
Image 8

Class Amplicon Complexity Score
Linear amplification 7 0.0
Image 9

Class Amplicon Complexity Score
ecDNA 8 0.6750799579
Image 10

Class Amplicon Complexity Score
ecDNA 9 0.7340832953
Image 11

Prediction

ecDNA: None


Prediction

No data