FADU_UPPER_AERODIGESTIVE_TRACT


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Circle Hunter Prediction
  • Shatterseek Prediction

ID Value
ATCC HTB-43
DSMZ ACC-784
Cellosaurus FaDu
Cosmic 906863.0

Property Value
% Polyploidy None
Ploidy Classification mix(hypodiploid, hypertriploid)
Modal Chromosome Number 64.0
Modal Range Numeric 35-80
Marker Chromosomes Average Field None
Primary or Metastasis Primary
Count of SV's 0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: (P16) hypodiploid to hypertriploid with modal number = 64

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'BFB', 'Complex non-cyclic', 'ecDNA']

Predicted Genes on ecDNA

['ACY3', 'AIP', 'ALDH3B2', 'C11orf72', 'CABP2', 'CDK2AP2', 'DOC2GP', 'FAM86C2P', 'GSTP1', 'NDUFV1', 'NUDT8', 'PITPNM1', 'TBX10', 'TMEM134']

Predicted Features

Class Amplicon Complexity Score
BFB 10 0.9918518769
Image 1

Class Amplicon Complexity Score
Complex non-cyclic 11 1.675128222
Image 2

Class Amplicon Complexity Score
BFB 12 1.004634213
Image 3

Class Amplicon Complexity Score
Linear amplification 13 1.130390538
Image 4

Class Amplicon Complexity Score
Linear amplification 1 0.5459698839
Image 5

Class Amplicon Complexity Score
BFB 2 0.9774334964
Image 6

Class Amplicon Complexity Score
Complex non-cyclic 3 1.866364448
Image 7

Class Amplicon Complexity Score
Linear amplification 4 0.437490382
Image 8

Class Amplicon Complexity Score
Linear amplification 5 0.0579716122
Image 9

Class Amplicon Complexity Score
Linear amplification 6 0.6579471692
Image 10

Class Amplicon Complexity Score
Complex non-cyclic 7 1.087371896
Image 11

Class Amplicon Complexity Score
BFB 8 0.9371563842
Image 12

Class Amplicon Complexity Score
ecDNA 9 0.6650204931
Image 13

Prediction

ecDNA: negative


Prediction

Shatterseek Prediction: High Confidence

Shatterseek High Confidence Chromosomes: 9, 18, 19, 20, X

Shatterseek Low Confidence Chromosomes: 3