ESO51_OESOPHAGUS


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction

ID Value
ATCC None
DSMZ ACC-694
Cellosaurus None
Cosmic 1503367.0

Property Value
% Polyploidy None
Ploidy Classification mix(hyperdiploid, hypertetraploid)
Modal Chromosome Number None
Modal Range Numeric 51-121
Marker Chromosomes Average Field None
Primary or Metastasis Primary
Count of SV's 9

Details

ecDNA Present (Y/N/P): N

HSR Classification: Y

ATCC Karyotype: No data

DSMZ Karyotype: human flat bimodal hyperdiploid/hypertetraploid karyotype; 51-63/90-121<4n>XXXX, -Y, -Y, -Y, -Y, + 5-12mar; add(X)(p11)x2, del(2)(q21)x2, dup(2)(q11q24)i(2)(q10), dup(3)(q24q29), i(3)(p10), add(3)(p25), add(7)(q21)(hsr)x2, del(13)(q11q13), add(17)(q 25), add(21)(p11)

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'Complex non-cyclic', 'ecDNA', 'BFB']

Predicted Genes on ecDNA

['LRRN3', 'ADNP', 'ADNP-AS1', 'ATP9A', 'B4GALT5', 'BCAS1', 'BCAS4', 'CEBPB', 'CEBPB-AS1', 'CYP24A1', 'DDX27', 'DPM1', 'KCNB1', 'KCNG1', 'MOCS3', 'NFATC2', 'PARD6B', 'PFDN4', 'PTGIS', 'PTPN1', 'RIPOR3', 'RNF114', 'SALL4', 'SLC9A8', 'SMIM25', 'SNAI1', 'SNORD12', 'SNORD12B', 'SNORD12C', 'SPATA2', 'STAU1', 'SUMO1P1', 'TMEM189', 'TMEM189-UBE2V1', 'TRERNA1', 'TSHZ2', 'UBE2V1', 'ZFAS1', 'ZFP64', 'ZNF217', 'ZNFX1']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.6901786047
Image 1

Class Amplicon Complexity Score
Complex non-cyclic 2 1.887999459
Image 2

Class Amplicon Complexity Score
ecDNA 3 0.6175636951
Image 3

Class Amplicon Complexity Score
Complex non-cyclic 4 1.365017756
Image 4

Class Amplicon Complexity Score
Complex non-cyclic 5 2.069293557
Image 5

Class Amplicon Complexity Score
BFB 6 1.172460625
Image 6

Class Amplicon Complexity Score
ecDNA 7 0.684393642
Image 7

Prediction

ecDNA: None


Prediction

No data