EFM19_BREAST


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction

ID Value
ATCC None
DSMZ ACC-231
Cellosaurus None
Cosmic 906851.0

Property Value
% Polyploidy 5.8
Ploidy Classification hypotriploid
Modal Chromosome Number 62.0
Modal Range Numeric 58-65
Marker Chromosomes Average Field None
Primary or Metastasis Metastasis
Count of SV's 4

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: human highly rearranged hypotriploid karyotype with 5.8% polyploidy - 62(58-65)<3n>X, der(X), apparent ch 17 nullisomy and preponderance of marker chromosomes, e.g. add(1)(p11), idel(1)(q11q?22), i(1p), i(2p), add(4)(p11), add(4)(p11), etc. - resembes original description

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'ecDNA', 'BFB']

Predicted Genes on ecDNA

['ADK', 'AGAP5', 'ANXA11', 'AP3M1', 'ARL3', 'BEND3P3', 'BMS1P21', 'BMS1P4', 'BMS1P4-AGAP5', 'C10orf55', 'CAMK2G', 'CFAP43', 'CHCHD1', 'COL17A1', 'COMTD1', 'DLG5', 'DLG5-AS1', 'DUPD1', 'DUSP13', 'DYDC1', 'DYDC2', 'EIF5AL1', 'FAS', 'FUT11', 'GLUD1P3', 'GSTO1', 'GSTO2', 'KAT6B', 'KCNMA1', 'KCNMA1-AS1', 'KCNMA1-AS2', 'KCNMA1-AS3', 'LRMDA', 'MAT1A', 'MBL1P', 'MYOZ1', 'NDST2', 'NEURL1', 'NEURL1-AS1', 'NUTM2B', 'NUTM2B-AS1', 'NUTM2E', 'PLAC9', 'PLAU', 'POLR3A', 'PPIF', 'RPS24', 'SAMD8', 'SEC24C', 'SFR1', 'SFTPA1', 'SFTPA2', 'SFTPD', 'SFXN2', 'SH3PXD2A', 'SH3PXD2A-AS1', 'SLK', 'SNORD172', 'STN1', 'SUFU', 'SYNPO2L', 'TMEM254', 'TMEM254-AS1', 'TRIM8', 'USP54', 'VCL', 'VDAC2', 'WBP1L', 'ZCCHC24', 'ZMIZ1', 'ZMIZ1-AS1', 'ZNF503', 'ZNF503-AS1', 'ZNF503-AS2', 'ZSWIM8', 'ZSWIM8-AS1', 'AKTIP', 'CHD9', 'RBL2']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.6769226681
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.8838824383
Image 2

Class Amplicon Complexity Score
ecDNA 3 1.486460868
Image 3

Class Amplicon Complexity Score
ecDNA 4 0.7415610389
Image 4

Class Amplicon Complexity Score
Linear amplification 5 0.0
Image 5

Class Amplicon Complexity Score
BFB 6 0.7529903914
Image 6

Prediction

ecDNA: None


Prediction

No data