DMS53_LUNG


Available Data

  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction
  • Circle Hunter Prediction

ID Value
ATCC CRL-2062
DSMZ None
Cellosaurus DMS 53
Cosmic 907295.0

Details

ecDNA Present (Y/N/P): N

Literature source: https://aacrjournals.org/cancerdiscovery/article/13/4/928/725029/Extrachromosomal-DNA-Amplification-Contributes-to

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'Complex non-cyclic', 'ecDNA']

Predicted Genes on ecDNA

['AKAP3', 'ANO2', 'BCAT1', 'C12orf4', 'C12orf77', 'CASC1', 'CCND2', 'CCND2-AS1', 'CRACR2A', 'DYRK4', 'ETFRF1', 'FGF23', 'FGF6', 'GALNT8', 'GAU1', 'KCNA1', 'KCNA5', 'KCNA6', 'KRAS', 'LMNTD1', 'LRMP', 'NDUFA9', 'NTF3', 'PARP11', 'PRMT8', 'RAD51AP1', 'RASSF8', 'RASSF8-AS1', 'SOX5-AS1', 'THCAT155', 'TIGAR', 'TSPAN9']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.6634260984
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.6822152725
Image 2

Class Amplicon Complexity Score
Linear amplification 3 0.8187096629
Image 3

Class Amplicon Complexity Score
Linear amplification 5 0.6275992479
Image 4

Class Amplicon Complexity Score
Complex non-cyclic 6 1.019389058
Image 5

Class Amplicon Complexity Score
ecDNA 7 0.7273983338
Image 6

Prediction

ecDNA: negative


Prediction

No data