DMS273_LUNG


Available Data

  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC None
DSMZ None
Cellosaurus None
Cosmic 687985.0

Details

ecDNA Present (Y/N/P): Y

Literature source: https://aacrjournals.org/cancerdiscovery/article/13/4/928/725029/Extrachromosomal-DNA-Amplification-Contributes-to

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['BFB', 'ecDNA', 'Linear amplification']

Predicted Genes on ecDNA

['GBAT2', 'PI4KB', 'PIP5K1A', 'POGZ', 'PSMB4', 'PSMD4', 'RFX5', 'SELENBP1', 'ZNF687', 'ZNF687-AS1', 'CASC11', 'MYC', 'ZFPM2-AS1']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.2884789085
Image 1

Class Amplicon Complexity Score
BFB 1 0.6034858228
Image 2

Class Amplicon Complexity Score
Linear amplification 2 0.7585870246
Image 3

Class Amplicon Complexity Score
ecDNA 3 1.703109643
Image 4

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: No Chromothripsis Detected

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: None