Available Data

Vendor Karyotype
Amplicon Architect Prediction

ID	Value
ATCC	None
DSMZ	ACC-249
Cellosaurus	None
Cosmic	1290797.0

Karyotype Details

Property	Value
% Polyploidy	3.5
Ploidy Classification	hypotriploid
Modal Chromosome Number	59.0
Modal Range Numeric	52-61
Marker Chromosomes Average Field	4.0
Primary or Metastasis	None
Count of SV's	15

Details

ecDNA Present (Y/N/P): N

HSR Classification: Y

ATCC Karyotype: No data

DSMZ Karyotype: human irregular hypotriploid karyotype with 3.5% polyploidy - 59(52-61)<3n>der(X), -X/Y, -X/Y, -1, -2, -3, -4, -5, +6, +7, -9, -10, -13, -16, -17, -18, -20, -22, -22, +4mar, add(2)(p?16), add(4)(q25), i(5p), add(6)(p22), add(7)(p11/13), der(7)t(3;7)(q11;p11), del(7)(p13), add(8)(p11), add(9)(p21), add(12)(p11), i(13q), der(14)t(14;?22)(q32;q12), add(15)(q26), der(19)t(19;hsr)(p13;?), add(20)(q13)

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'Complex non-cyclic', 'BFB', 'ecDNA']

Predicted Genes on ecDNA

['ADAM18', 'ADAM2', 'ADAM3A', 'ADGRA2', 'ADRB3', 'ASH2L', 'BAG4', 'BRF2', 'C8orf74', 'C8orf86', 'DDHD2', 'EIF4EBP1', 'ERLIN2', 'FGFR1', 'GOT1L1', 'LETM2', 'LSM1', 'MSRA', 'MTMR9', 'NSD3', 'PINX1', 'PLPBP', 'PLPP5', 'PRSS55', 'RAB11FIP1', 'RNF5P1', 'RP1L1', 'SLC35G5', 'SOX7', 'STAR', 'TACC1', 'UNC5D', 'XKR6', 'ZNF703']

Predicted Features

View Feature 1 - DANG_PANCREAS Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	1	0.6642938455

View Feature 2 - DANG_PANCREAS Complex non-cyclic

Class	Amplicon	Complexity Score
Complex non-cyclic	2	1.317579906

View Feature 3 - DANG_PANCREAS BFB

Class	Amplicon	Complexity Score
BFB	3	0.8083321158

View Feature 4 - DANG_PANCREAS ecDNA

Class	Amplicon	Complexity Score
ecDNA	4	0.7016817201

View Feature 5 - DANG_PANCREAS ecDNA

Class	Amplicon	Complexity Score
ecDNA	4	0.5476790664

View Feature 6 - DANG_PANCREAS Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	5	1.04522771

View Feature 7 - DANG_PANCREAS BFB

Class	Amplicon	Complexity Score
BFB	6	1.102437615

View Feature 8 - DANG_PANCREAS BFB

Class	Amplicon	Complexity Score
BFB	7	0.9535450128

Prediction

ecDNA: None

Prediction

No data