Available Data

Amplicon Architect Prediction
Shatterseek Prediction

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'BFB']

Predicted Genes on ecDNA

['CHTOP', 'CREB3L4', 'CRTC2', 'DENND4B', 'GATAD2B', 'ILF2', 'INTS3', 'JTB', 'NPR1', 'NUP210L', 'PGLYRP3', 'PGLYRP4', 'RAB13', 'RPS27', 'S100A1', 'S100A12', 'S100A13', 'S100A14', 'S100A16', 'S100A2', 'S100A3', 'S100A4', 'S100A5', 'S100A6', 'S100A7', 'S100A7A', 'S100A8', 'S100A9', 'SLC27A3', 'SLC39A1', 'SNAPIN']

Predicted Features

View Feature 1 - COV644_OVARY ecDNA

Class	Amplicon	Complexity Score
ecDNA	1	1.648402728

View Feature 2 - COV644_OVARY BFB

Class	Amplicon	Complexity Score
BFB	2	1.709429445

Prediction

ecDNA: None

Prediction

Shatterseek Prediction: High Confidence

Shatterseek High Confidence Chromosomes: 3

Shatterseek Low Confidence Chromosomes: None