Available Data

ecDNA Presence Verification from Literature
Amplicon Architect Prediction
Circle Hunter Prediction
Shatterseek Prediction

ID	Value
ATCC	None
DSMZ	None
Cellosaurus	None
Cosmic	906808.0

Details

ecDNA Present (Y/N/P): Y

Literature source: https://aacrjournals.org/cancerdiscovery/article/13/4/928/725029/Extrachromosomal-DNA-Amplification-Contributes-to

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['BFB', 'ecDNA', 'Complex non-cyclic']

Predicted Genes on ecDNA

['BMP8A', 'BMP8B', 'CAP1', 'COL9A2', 'EXO5', 'HEYL', 'HPCAL4', 'MFSD2A', 'MYCL', 'NT5C1A', 'OXCT2', 'OXCT2P1', 'PABPC4', 'PABPC4-AS1', 'PPIE', 'PPIEL', 'PPT1', 'RLF', 'SMAP2', 'SNORA55', 'TMCO2', 'TRIT1', 'ZFP69', 'ZFP69B', 'ZMPSTE24', 'ZNF684']

Predicted Features

View Feature 1 - CORL88_LUNG BFB

Class	Amplicon	Complexity Score
BFB	1	1.027041599

View Feature 2 - CORL88_LUNG BFB

Class	Amplicon	Complexity Score
BFB	2	1.101757423

View Feature 3 - CORL88_LUNG ecDNA

Class	Amplicon	Complexity Score
ecDNA	3	0.9999574082

View Feature 4 - CORL88_LUNG BFB

Class	Amplicon	Complexity Score
BFB	4	1.099955792

View Feature 5 - CORL88_LUNG Complex non-cyclic

Class	Amplicon	Complexity Score
Complex non-cyclic	5	1.092328325

Prediction

ecDNA: negative

Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 1