CORL311_LUNG


Available Data

  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC None
DSMZ None
Cellosaurus None
Cosmic 687980.0

Details

ecDNA Present (Y/N/P): Y

Literature source: https://aacrjournals.org/cancerdiscovery/article/13/4/928/725029/Extrachromosomal-DNA-Amplification-Contributes-to

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification']

Predicted Genes on ecDNA

['AASDHPPT', 'ACAT1', 'ALG9', 'ALKBH8', 'ANKK1', 'ARHGAP20', 'ATM', 'BCO2', 'BTG4', 'C11orf1', 'C11orf52', 'C11orf53', 'C11orf65', 'C11orf87', 'C11orf88', 'CARD16', 'CARD17', 'CARD18', 'CASP1', 'CASP12', 'CASP17P', 'CASP1P2', 'CASP4', 'CASP5', 'CLDN25', 'COLCA1', 'COLCA2', 'CRYAB', 'CUL5', 'CWF19L2', 'DDX10', 'DIXDC1', 'DLAT', 'DRD2', 'DYNC2H1', 'ELMOD1', 'EXPH5', 'FDX1', 'FDXACB1', 'GRIA4', 'GUCY1A2', 'HSPB2', 'HSPB2-C11orf52', 'IL18', 'KBTBD3', 'LAYN', 'MSANTD4', 'NCAM1', 'NCAM1-AS1', 'NKAPD1', 'NPAT', 'PIH1D2', 'PLET1', 'POGLUT3', 'POU2AF1', 'PPP2R1B', 'PTS', 'RAB39A', 'RDX', 'SDHD', 'SIK2', 'SLC35F2', 'SLN', 'TEX12', 'TIMM8B', 'TMPRSS5', 'TTC12', 'USP28', 'ZC3H12C', 'ZW10', 'ATG5', 'BEND3', 'CASC11', 'CD24', 'CRYBG1', 'MTRES1', 'MYC', 'PDSS2', 'PRDM1', 'PVT1', 'QRSL1', 'RTN4IP1', 'SLC6A18', 'TERT', 'TMEM75']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 1.201932996
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.5793387191
Image 2

Class Amplicon Complexity Score
ecDNA 3 1.926235516
Image 3

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 5