CORL23_LUNG


Available Data

  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction

ID Value
ATCC None
DSMZ None
Cellosaurus None
Cosmic 687780.0

Details

ecDNA Present (Y/N/P): N

Literature source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3099236/
https://onlinelibrary.wiley.com/doi/abs/10.1002/ijc.2910600518

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: DMs seen in drug resistant line; ABC transporter / chr 16

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification']

Predicted Genes on ecDNA

['CASC11', 'CASC19', 'CASC21', 'CASC8', 'CCAT1', 'CCAT2', 'LRATD2', 'MYC', 'PCAT2', 'POU5F1B', 'PRNCR1', 'PVT1', 'TMEM75', 'CASC1', 'CRACR2A', 'ETFRF1', 'FGF23', 'KRAS', 'LMNTD1', 'PARP11', 'PRMT8', 'RASSF8', 'RASSF8-AS1', 'TEAD4', 'THCAT155', 'TIGAR', 'TSPAN9', 'TULP3']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 2.555219027
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.6266117325
Image 2

Class Amplicon Complexity Score
ecDNA 3 0.984383157
Image 3

Prediction

ecDNA: None


Prediction

No data