COLO320HSR_LARGE_INTESTINE


Available Data

  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction
  • Circle Hunter Prediction

ID Value
ATCC None
DSMZ None
Cellosaurus None
Cosmic 910569.0

Details

ecDNA Present (Y/N/P): N

Literature source: https://cancerres.aacrjournals.org/content/canres/39/12/4914.full.pdf

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'BFB', 'Complex non-cyclic', 'ecDNA']

Predicted Genes on ecDNA

['CASC11', 'CASC19', 'CASC21', 'CASC8', 'CCAT1', 'CCAT2', 'DUSP22', 'LRATD2', 'MYC', 'PCAT1', 'PCAT2', 'POU5F1B', 'PRNCR1', 'PVT1', 'TMEM75']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.4636622674
Image 1

Class Amplicon Complexity Score
BFB 2 1.341743897
Image 2

Class Amplicon Complexity Score
Complex non-cyclic 3 1.014467608
Image 3

Class Amplicon Complexity Score
ecDNA 4 0.8119162882
Image 4

Class Amplicon Complexity Score
ecDNA 4 0.154520608
Image 5

Prediction

ecDNA: positive

Genes: .;RNU6-869P,LOC1249219,RNU11-4P,SRRM1P1;RNU6-869P,LOC1249219;LOC1249219,RNU11-4P,SRRM1P1;RNU6-869P,LOC1249219,RNU11-4P;LOC1249219


Prediction

No data