COLO320DM_LARGE_INTESTINE


Available Data

  • Vendor Karyotype
  • ecDNA Presence Verification from Literature
  • Amplicon Architect Prediction
  • Circle Hunter Prediction

ID Value
ATCC None
DSMZ ACC-144
Cellosaurus None
Cosmic None

Property Value
% Polyploidy None
Ploidy Classification hyperdiploid
Modal Chromosome Number 53.0
Modal Range Numeric 50-54
Marker Chromosomes Average Field 6.0
Primary or Metastasis Primary
Count of SV's

Details

ecDNA Present (Y/N/P): Y

Literature source: https://cancerres.aacrjournals.org/content/canres/39/12/4914.full.pdf

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: human hyperdiploid karyotype - 53(50-54)<2n>XX, -3, -3, +5, +7, +12, -13, -17, +18, +22, +6mar, t(1;5) (p11;q11), der(5)t(5;?)(p15;?), der(7)t(7;?)(q22;?), der(9)t(9;?)(p11;?), del(9)(p22), del(12)(p12), i(13q), der(14)t(14;?)(q24;?), der(18)t(18;?)(p11;?) - variable numbers of supernumerary dmins were present in 90% of cells

Heterogeneity Indications and Other Notes: variable numbers of supernumerary dmins were present in 90% of cells

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: None

Predicted Genes on ecDNA

None

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 1.242783993
Image 1

Class Amplicon Complexity Score
Linear amplification 2 0.7595348024
Image 2

Class Amplicon Complexity Score
ecDNA 3 1.481205137
Image 3

Class Amplicon Complexity Score
Linear amplification 4 0.8202328758
Image 4

Class Amplicon Complexity Score
Linear amplification 5 3e-10
Image 5

Prediction

ecDNA: positive

Genes: .;RNU6-869P,LOC1249219,RNU11-4P,SRRM1P1;RNU11-4P;LOC1249219,RNU11-4P,SRRM1P1;RNU11-4P,SRRM1P1;SRRM1P1;ATP5F1EP2;LOC1249219;LOC1249219,RNU11-4P


Prediction

No data