Available Data

ecDNA Presence Verification from Literature
Amplicon Architect Prediction
Circle Hunter Prediction
Shatterseek Prediction

ID	Value
ATCC	CRL-2273
DSMZ	None
Cellosaurus	CHP-212
Cosmic	906820.0

Details

ecDNA Present (Y/N/P): Y

Literature source: https://pubmed.ncbi.nlm.nih.gov/23064640/

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: with the double minutes form of MYCN amplification is derived from the primary site (22), the other MYCN-amplified cell lines with the homogeneously staining region form of MYCN amplification are derived from bone marrow metastasis (

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA']

Predicted Genes on ecDNA

['DDX1', 'GACAT3', 'GREB1', 'LPIN1', 'MYCN', 'MYCNOS', 'MYCNUT', 'NTSR2', 'TRIB2']

Predicted Features

View Feature 1 - CHP212_AUTONOMIC_GANGLIA ecDNA

Class	Amplicon	Complexity Score
ecDNA	1	1.002736449

Prediction

ecDNA: positive

Genes: .;RNU5E-7P,RPLP1P5,RN7SL14P;RNU2-13P,RNA5SP85,RN7SL674P,CDK8P1,ST13P1,RNU6-843P

Prediction

Shatterseek Prediction: No Chromothripsis Detected

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: None