CHAGOK1_LUNG


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction

ID Value
ATCC HTB-168
DSMZ None
Cellosaurus ChaGo-K-1
Cosmic 687596.0

Property Value
% Polyploidy 3.8
Ploidy Classification hyperdiploid
Modal Chromosome Number 52.0
Modal Range Numeric 48-57
Marker Chromosomes Average Field None
Primary or Metastasis Metastasis
Count of SV's 6

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: This is a hyperdiploid human cell line. The modal chromosome number is 52, occurring at 40% with polyploidy at 3.8%., Over 2/3 of the chromosome complement consist of those with structural rearrangements (or markers) including 1q, t(1p,16q), del(3)(p13), t(5;14)(q35;q11), t(9q;?)1, t(9q;?)2, 12p+, 20p+, t(Xq,7p)., Twenty-one other markers are common to most cells. The normal chromosomes 1,3,5,9,14,15 and X are absent. All three E group chromosomes are paired., Y chromosome not detected by Q staining.

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Linear amplification', 'BFB', 'Complex non-cyclic', 'ecDNA']

Predicted Genes on ecDNA

['ACTRT3', 'GPR160', 'LRRC31', 'LRRC34', 'LRRIQ4', 'MECOM', 'MYNN', 'PHC3', 'PRKCI', 'SAMD7', 'SEC62', 'SKIL', 'TERC']

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.5234275888
Image 1

Class Amplicon Complexity Score
BFB 2 0.8933438598
Image 2

Class Amplicon Complexity Score
Complex non-cyclic 3 0.5009727666
Image 3

Class Amplicon Complexity Score
ecDNA 4 0.6057999145
Image 4

Class Amplicon Complexity Score
Complex non-cyclic 5 2.202301606
Image 5

Class Amplicon Complexity Score
Linear amplification 6 1e-10
Image 6

Class Amplicon Complexity Score
Linear amplification 7 0.6011356477
Image 7

Class Amplicon Complexity Score
Linear amplification 8 0.8509336971
Image 8

Class Amplicon Complexity Score
Linear amplification 9 0.8974414055
Image 9

Prediction

ecDNA: None


Prediction

No data