Available Data

Vendor Karyotype
Amplicon Architect Prediction
Shatterseek Prediction

ID	Value
ATCC	HTB-56
DSMZ	ACC-734
Cellosaurus	Calu-6
Cosmic	724859.0

Karyotype Details

Property	Value
% Polyploidy	None
Ploidy Classification	hypotriploid
Modal Chromosome Number	59.0
Modal Range Numeric	58-68
Marker Chromosomes Average Field	14.0
Primary or Metastasis	Metastasis
Count of SV's	0

Details

ecDNA Present (Y/N/P): N

HSR Classification: N

ATCC Karyotype: The stemline chromosome number is hypotriploid and the 2S component occurred at 5.8%. Modal chromosome number is 59. Fourteen marker chromosomes (constitutive) were common to most S metaphases. No Y chromosome was detected in the QM stained preparation.

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification', 'Complex non-cyclic']

Predicted Genes on ecDNA

['ABCC4', 'CLDN10', 'CLDN10-AS1', 'CLYBL', 'CLYBL-AS1', 'CLYBL-AS2', 'DCT', 'DNAJC3', 'DNAJC3-DT', 'DOCK9', 'DOCK9-AS1', 'DOCK9-DT', 'DZIP1', 'FARP1', 'FKSG29', 'GPC5', 'GPC5-AS1', 'GPC5-AS2', 'GPC6', 'GPC6-AS1', 'GPC6-AS2', 'GPR18', 'GPR180', 'GPR183', 'HS6ST3', 'IPO5', 'MBNL2', 'OXGR1', 'RAP2A', 'RNF113B', 'SLC15A1', 'SNORD13G', 'SOX21', 'SOX21-AS1', 'STK24', 'STK24-AS1', 'TGDS', 'TM9SF2', 'UBAC2', 'UBAC2-AS1', 'UGGT2']

Predicted Features

View Feature 1 - CALU6_LUNG ecDNA

Class	Amplicon	Complexity Score
ecDNA	1	1.093921101

View Feature 2 - CALU6_LUNG Linear amplification

Class	Amplicon	Complexity Score
Linear amplification	2	0.2922613049

View Feature 3 - CALU6_LUNG Complex non-cyclic

Class	Amplicon	Complexity Score
Complex non-cyclic	3	1.361816423

Prediction

ecDNA: None

Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 1, 3