CAL27_UPPER_AERODIGESTIVE_TRACT


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Circle Hunter Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-2095
DSMZ ACC-446
Cellosaurus CAL-27
Cosmic 910916.0

Property Value
% Polyploidy 3.0
Ploidy Classification hypodiploid
Modal Chromosome Number 41.0
Modal Range Numeric 38-45
Marker Chromosomes Average Field 2.0
Primary or Metastasis Primary
Count of SV's 9

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: aneuploid; modal number = 43

DSMZ Karyotype: human flat-moded hypodiploid karyotype with 3% polyploidy - 41(38-45)<2n>X, -Y, -4, +7, -10, -11, -18, -20, -21, -22, +2-3mar, add(3)(q21), i(3q), i(7p), del(8)(p21), i(9q), add(13)(p11), add(14)(p11) - sideline with additional der(3) and der(7) - resembles published karyotype

Heterogeneity Indications and Other Notes: No data

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Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Linear amplification', 'BFB']

Predicted Genes on ecDNA

[]

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 1.553925415
Image 1

Class Amplicon Complexity Score
BFB 3 0.655726979
Image 2

Class Amplicon Complexity Score
Linear amplification 4 0.613202673
Image 3

Prediction

ecDNA: positive

Genes: .


Prediction

Shatterseek Prediction: No Chromothripsis Detected

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: None