CAKI2_KIDNEY


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction

ID Value
ATCC HTB-47
DSMZ ACC-54
Cellosaurus Caki-2
Cosmic None

Property Value
% Polyploidy 12.0
Ploidy Classification mix(hypopentaploid, pentaploid, hyperpentaploid, hypohexaploid, hexaploid)
Modal Chromosome Number None
Modal Range Numeric 105-138
Marker Chromosomes Average Field None
Primary or Metastasis Primary
Count of SV's 7

Details

ecDNA Present (Y/N/P): Y

HSR Classification: N

ATCC Karyotype: (P8) hypopentaploid to hypohexaploid (+A2, +A3, +B, +C, +D, +F, +G, -A) with abnormalities including dicentrics, acrocentric fragments, minutes, breaks, and large subtelocentric markers

DSMZ Karyotype: human flat-moded pentaploid/hexaploid karyotype with 12% polyploidy - 130(118-132)<6n>XXX, -Y, -Y, -Y, inc, add(1)(p22), i(8q), i(?5q)x2, del(6)(q23), t(14;15)(p10;q10), der(19)t(1;19)(q24;q13), dminx1, large iso der(5q)x2, and submeta marker der(?)t(?;2)(?;q11)x2 - resembles published karyotype

Heterogeneity Indications and Other Notes: dminx1

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Complex non-cyclic', 'Linear amplification']

Predicted Genes on ecDNA

[]

Predicted Features

Class Amplicon Complexity Score
Complex non-cyclic 1 0.8698172471
Image 1

Class Amplicon Complexity Score
Linear amplification 2 9e-10
Image 2

Class Amplicon Complexity Score
Complex non-cyclic 3 1.520758026
Image 3

Class Amplicon Complexity Score
Linear amplification 4 0.5627039456
Image 4

Class Amplicon Complexity Score
Linear amplification 5 0.6892955324
Image 5

Prediction

ecDNA: None


Prediction

No data