BT20_BREAST


Available Data

  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-7912
DSMZ None
Cellosaurus BT-20
Cosmic 906801.0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['BFB', 'Complex non-cyclic', 'Linear amplification', 'ecDNA']

Predicted Genes on ecDNA

['ALOX5AP', 'B3GLCT', 'EEF1DP3', 'HMGB1', 'HSPH1', 'KATNAL1', 'MEDAG', 'RXFP2', 'TEX26', 'TEX26-AS1', 'UBE2L5', 'USPL1', 'EAF2', 'GOLGB1', 'ILDR1', 'IQCB1', 'SLC15A2', 'C4orf48', 'NELFA', 'NSD2', 'SCARNA22']

Predicted Features

Class Amplicon Complexity Score
Complex non-cyclic 10 1.571602472
Image 1

Class Amplicon Complexity Score
Linear amplification 11 0.9434583939
Image 2

Class Amplicon Complexity Score
BFB 12 0.9494568464
Image 3

Class Amplicon Complexity Score
ecDNA 13 0.6902300588
Image 4

Class Amplicon Complexity Score
Linear amplification 14 0.0
Image 5

Class Amplicon Complexity Score
BFB 1 0.8806172269
Image 6

Class Amplicon Complexity Score
Complex non-cyclic 2 1.997058735
Image 7

Class Amplicon Complexity Score
ecDNA 3 0.6461313948
Image 8

Class Amplicon Complexity Score
ecDNA 4 0.6871338432
Image 9

Class Amplicon Complexity Score
Linear amplification 5 0.8596756717
Image 10

Class Amplicon Complexity Score
Linear amplification 6 0.0
Image 11

Class Amplicon Complexity Score
Linear amplification 7 1e-10
Image 12

Class Amplicon Complexity Score
Linear amplification 8 4.4e-09
Image 13

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: High Confidence

Shatterseek High Confidence Chromosomes: 20

Shatterseek Low Confidence Chromosomes: 3, 12