BFTC909_KIDNEY


Available Data

  • Vendor Karyotype
  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC None
DSMZ ACC-367
Cellosaurus None
Cosmic 910698.0

Property Value
% Polyploidy 32.0
Ploidy Classification hypertriploid
Modal Chromosome Number None
Modal Range Numeric 66-79
Marker Chromosomes Average Field 1.0
Primary or Metastasis Primary
Count of SV's 11

Details

ecDNA Present (Y/N/P): Y

HSR Classification: N

ATCC Karyotype: No data

DSMZ Karyotype: human flat-moded hypertriplod karyotype with 32% polyploidy - 66-79<3n>XX, -Y, +1, +3, +5, +7, -9, -11, +12, +17, -18, +19, +20, +21, +mar, add(1)(p34)x2, del(2)(p16), +dic(2;9)(q25;p22)x2, add(3)(p24)x2, add(6)(p23)x2, i(7p)x2, i(8q)x2, del(11)(q?22q23), add(12)(q24), add(19)(q13)x2 - 2-4 dmin present in most cells - gain of ch 7 and deletions of 9p typical in TCC - matches published karyotype

Heterogeneity Indications and Other Notes: 2-4 dmin present in most cells

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: N

Predicted Amplicon Classes: ['Linear amplification', 'BFB']

Predicted Genes on ecDNA

[]

Predicted Features

Class Amplicon Complexity Score
Linear amplification 1 0.5309404024
Image 1

Class Amplicon Complexity Score
BFB 2 0.9234851473
Image 2

Class Amplicon Complexity Score
BFB 3 1.2436545
Image 3

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 6