AU565_BREAST


Available Data

  • Amplicon Architect Prediction
  • Shatterseek Prediction

ID Value
ATCC CRL-2351
DSMZ None
Cellosaurus AU565
Cosmic 910704.0

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['ecDNA', 'Linear amplification', 'BFB']

Predicted Genes on ecDNA

['ACAA1', 'CTDSPL', 'DLEC1', 'MYD88', 'OXSR1', 'PLCD1', 'SLC22A13', 'SLC22A14', 'VILL', 'ANXA13', 'ARL5C', 'ATAD2', 'C8orf76', 'C8orf89', 'CACNB1', 'CALB1', 'CASC11', 'CASC19', 'CASC21', 'CASC3', 'CASC8', 'CASC9', 'CCAT1', 'CCAT2', 'CCN3', 'CDC6', 'CDK12', 'COL14A1', 'COLEC10', 'CRISPLD1', 'CSF3', 'CSMD3', 'DCAF4L2', 'DECR1', 'DEPTOR', 'DERL1', 'DSCC1', 'EIF3H', 'ELOC', 'ENPP2', 'ERBB2', 'EXT1', 'FAM83A', 'FAM83A-AS1', 'FAM91A1', 'FBXL20', 'FBXO32', 'FER1L6', 'FER1L6-AS1', 'FER1L6-AS2', 'GRB7', 'GSDMA', 'GSDMB', 'HAS2', 'HAS2-AS1', 'HEY1', 'HNF4G', 'IKZF3', 'IL7', 'JPH1', 'KCNB2', 'KLHL38', 'KRT33A', 'KRT33B', 'KRT34', 'KRTAP16-1', 'KRTAP17-1', 'KRTAP29-1', 'KRTAP4-1', 'KRTAP4-11', 'KRTAP4-12', 'KRTAP4-2', 'KRTAP4-3', 'KRTAP4-4', 'KRTAP4-5', 'KRTAP4-6', 'KRTAP9-1', 'KRTAP9-2', 'KRTAP9-3', 'KRTAP9-4', 'KRTAP9-6', 'KRTAP9-7', 'KRTAP9-8', 'KRTAP9-9', 'LRRC3C', 'LY96', 'MAL2', 'MAL2-AS1', 'MED1', 'MED24', 'MIEN1', 'MMP16', 'MRPL13', 'MRPS28', 'MSC', 'MSC-AS1', 'MSL1', 'MTBP', 'MTSS1', 'MYC', 'NBN', 'NCOA2', 'NDUFB9', 'NEUROD2', 'NR1D1', 'ORMDL3', 'OSGIN2', 'PCAT1', 'PCAT2', 'PEX2', 'PGAP3', 'PI15', 'PKIA', 'PLXDC1', 'PNMT', 'POU5F1B', 'PPP1R1B', 'PRNCR1', 'PSMD3', 'RAPGEFL1', 'RARA', 'RDH10', 'RDH10-AS1', 'RIPK2', 'RNF139', 'RNF139-AS1', 'RPL19', 'RPL7', 'SAMD12', 'SAMD12-AS1', 'SBSPON', 'SMILR', 'SNORD124', 'SNORD168', 'SNTB1', 'STAC2', 'STARD3', 'STAU2', 'STAU2-AS1', 'STMN2', 'TAF2', 'TATDN1', 'TBC1D31', 'TCAP', 'TERF1', 'THRA', 'TMEM65', 'TMEM70', 'TMEM75', 'TNFRSF11B', 'TPD52', 'TRMT12', 'TRPA1', 'TRPS1', 'UBE2W', 'WDYHV1', 'WIPF2', 'ZBTB10', 'ZC2HC1A', 'ZFHX4', 'ZFHX4-AS1', 'ZHX1', 'ZHX1-C8orf76', 'ZHX2', 'ZNF704', 'ZPBP2']

Predicted Features

Class Amplicon Complexity Score
ecDNA 1 0.5252466952
Image 1

Class Amplicon Complexity Score
ecDNA 2 2.024622292
Image 2

Class Amplicon Complexity Score
Linear amplification 3 0.6737362791
Image 3

Class Amplicon Complexity Score
BFB 4 1.080923565
Image 4

Class Amplicon Complexity Score
Linear amplification 5 4.6e-09
Image 5

Class Amplicon Complexity Score
Linear amplification 6 0.552412129
Image 6

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 1, 2, 3, 6, 10