93T449_SOFT_TISSUE
Available Data
- Vendor Karyotype
- Amplicon Architect Prediction
| ID | Value |
|---|---|
| ATCC | CRL-3043 |
| DSMZ | None |
| Cellosaurus | None |
| Cosmic | None |
| Property | Value |
|---|---|
| % Polyploidy | None |
| Ploidy Classification | hyperdiploid |
| Modal Chromosome Number | None |
| Modal Range Numeric | 49-53 |
| Marker Chromosomes Average Field | None |
| Primary or Metastasis | Primary |
| Count of SV's | 0 |
Details
ecDNA Present (Y/N/P): N
HSR Classification: N
ATCC Karyotype: 49~53,xx,+3;7r [cp8]/49~52,XX,-7,-22,+4~7r, +mar[6]/q8~106, idemx2[cp11].ish r mar (1;4;10;amp12q14-15;15) (wcpl+; wcp 4+; wcp 10+, wcp 12+, amp MDM2, amp CDK4; wcp 15+). rev ish amp (1q24’ 1q31, 4p16, 10p15, 12q14, 12q21, 15q26)
DSMZ Karyotype: No data
Heterogeneity Indications and Other Notes: No data
Download Breakpoint Edges CSV
Prediction
ecDNA Amplicon Predicted: Y
Predicted Amplicon Classes: ['ecDNA']
Predicted Genes on ecDNA
['ADAMTS5', 'ADGRF5', 'AGAP2', 'AGAP2-AS1', 'AKR1C3', 'AKR1C8P', 'ALPK3', 'APP', 'ARHGEF25', 'ASB7', 'ATXN7L3B', 'B4GALNT1', 'BEST3', 'BLM', 'C12orf74', 'C1orf105', 'CAPS2', 'CCT2', 'CERS3', 'CERS3-AS1', 'CNOT2', 'CNOT2-DT', 'COMMD6', 'CPM', 'CPSF6', 'CRAT37', 'CRTC3-AS1', 'CSNK2A1', 'CYP27B1', 'CYYR1', 'CYYR1-AS1', 'DNM3', 'DNM3-IT1', 'DNM3OS', 'EEF1AKNMT', 'FAM169B', 'FAM3B', 'FASLG', 'FGD6', 'FKBP1A', 'FKBP1A-SDCBP2', 'FMO1', 'FMO2', 'FMO3', 'FMO6P', 'FRMD3', 'FRS2', 'FURIN', 'GLIPR1', 'GLIPR1L1', 'HMCN1', 'HSP90B2P', 'IGF1R', 'IRAIN', 'KCNC2', 'KCNMB4', 'KRR1', 'LINS1', 'LMO7-AS1', 'LRRC10', 'LRRC28', 'LYZ', 'MACROD2-IT1', 'MARCHF9', 'MARCKS', 'MDM2', 'METTL1', 'MROCKI', 'MROH9', 'MX2', 'MYOC', 'MYRFL', 'NR2C1', 'NSFL1C', 'NUP107', 'ODR4', 'OS9', 'PCA3', 'PDC', 'PDC-AS1', 'PIGC', 'PLCXD3', 'PLEKHG7', 'PRG4', 'PRKXP1', 'PRUNE2', 'PTPRB', 'PTPRR', 'RAB3IP', 'SDCBP2', 'SDCBP2-AS1', 'SDHAP1', 'SFTA1P', 'SH3TC1', 'SIRPB2', 'SLC26A10', 'SLC28A1', 'SLC28A3', 'SLC35E3', 'SLC6A18', 'SLC6A19', 'SLC6A3', 'SLCO3A1', 'SNORA113', 'SUCO', 'SYNM', 'SYT1', 'TBC1D20', 'TERT', 'TLE1', 'TPR', 'TRIP13', 'TSPAN31', 'TTC23', 'UCHL3', 'VAMP4', 'VEZT', 'YEATS4', 'ZNF592']
Predicted Features
View Feature 1 - 93T449_SOFT_TISSUE ecDNA
| Class | Amplicon | Complexity Score |
|---|---|---|
| ecDNA | 1 | 3.046251541 |
Prediction
ecDNA: None
Prediction
No data