59M_OVARY


Available Data

  • Amplicon Architect Prediction
  • Shatterseek Prediction

Details

ecDNA Present (Y/N/P): No data

HSR Classification: No data

ATCC Karyotype: No data

DSMZ Karyotype: No data

Heterogeneity Indications and Other Notes: No data

Download Breakpoint Edges CSV

Prediction

ecDNA Amplicon Predicted: Y

Predicted Amplicon Classes: ['Complex non-cyclic', 'ecDNA', 'Linear amplification']

Predicted Genes on ecDNA

['ATP6V1H', 'LYN', 'LYPLA1', 'MRPL15', 'NPBWR1', 'OPRK1', 'RB1CC1', 'RGS20', 'RNU105C', 'RP1', 'SBF1P1', 'SNORA1B', 'SOX17', 'TCEA1', 'TGS1', 'TMEM68', 'XKR4', 'MTSS1', 'NDUFB9', 'NSMCE2', 'RNF139', 'SQLE', 'TATDN1', 'TRIB1', 'WASHC5', 'ZNF572']

Predicted Features

Class Amplicon Complexity Score
Complex non-cyclic 1 1.181822926
Image 1

Class Amplicon Complexity Score
ecDNA 2 1.087619398
Image 2

Class Amplicon Complexity Score
ecDNA 2 0.3686713187
Image 3

Class Amplicon Complexity Score
Linear amplification 3 0.0
Image 4

Prediction

ecDNA: None


Prediction

Shatterseek Prediction: Low Confidence

Shatterseek High Confidence Chromosomes: None

Shatterseek Low Confidence Chromosomes: 8, 9, 11